Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13450

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,565,633	-		LU632_RS13445	0.15	+4.3
2,565,809	+		LU632_RS13445	0.36	+1.4
2,565,809	+		LU632_RS13445	0.36	+0.1
2,566,252	-		LU632_RS13445	0.90	+0.8
2,566,340	+				+1.0
2,566,343	-				+3.2
2,566,343	-				+4.7
2,566,373	+				+1.3
2,566,373	+				-0.9
2,566,374	-				+0.4
2,566,437	+				-0.9
2,566,443	+				+2.0
2,566,454	-				-0.2
2,566,454	-				+1.2
2,566,480	-				-1.0
2,566,489	+		LU632_RS13450	0.10	+0.7
2,566,489	+		LU632_RS13450	0.10	+0.7
2,566,490	-		LU632_RS13450	0.11	+1.5
2,566,490	-		LU632_RS13450	0.11	+0.1
2,566,519	+		LU632_RS13450	0.21	+0.5
2,566,675	-		LU632_RS13450	0.75	+0.7
2,566,675	-		LU632_RS13450	0.75	-0.6
2,566,707	+		LU632_RS13450	0.86	+0.6
2,566,707	+		LU632_RS13450	0.86	-0.3
2,566,708	-		LU632_RS13450	0.86	-0.5
2,566,720	+				+1.7
2,566,720	+				-0.6
2,566,721	-				+0.1
2,566,721	-				+0.2
2,566,781	+				+0.4
2,566,781	+				-0.1
2,566,782	-				-2.3
2,566,782	-				-0.7
2,566,884	+				+0.3
2,566,884	+				+0.1
2,566,885	-				-2.4
2,566,885	-				-0.2
2,566,885	-				-3.0
2,566,885	-				-1.9
2,566,885	-				+0.8
2,567,005	-	cmoA	LU632_RS13455	0.16	+0.7
2,567,005	-	cmoA	LU632_RS13455	0.16	-0.3
2,567,010	+	cmoA	LU632_RS13455	0.17	-4.0
2,567,065	+	cmoA	LU632_RS13455	0.24	-3.1
2,567,072	+	cmoA	LU632_RS13455	0.25	+0.2
2,567,331	+	cmoA	LU632_RS13455	0.60	-2.3
2,567,332	-	cmoA	LU632_RS13455	0.60	-1.1
2,567,332	-	cmoA	LU632_RS13455	0.60	-1.3
2,567,554	-				+1.0
2,567,643	+				+0.1
2,567,725	+	cmoB	LU632_RS13460	0.11	-2.1
2,567,726	-	cmoB	LU632_RS13460	0.11	+0.3