Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13210

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,522,011	+	rlmA	LU632_RS13200	0.43	-0.3
2,522,012	-	rlmA	LU632_RS13200	0.43	-1.9
2,522,045	+	rlmA	LU632_RS13200	0.47	-2.8
2,522,156	+	rlmA	LU632_RS13200	0.60	-0.3
2,522,191	+	rlmA	LU632_RS13200	0.64	-0.3
2,522,191	+	rlmA	LU632_RS13200	0.64	+1.6
2,522,327	+	rlmA	LU632_RS13200	0.81	+0.7
2,522,360	+	rlmA	LU632_RS13200	0.85	-0.3
2,522,361	-	rlmA	LU632_RS13200	0.85	+0.7
2,522,381	+	rlmA	LU632_RS13200	0.87	-0.0
2,522,381	+	rlmA	LU632_RS13200	0.87	+0.7
2,522,382	-	rlmA	LU632_RS13200	0.87	-1.1
2,522,386	+	rlmA	LU632_RS13200	0.88	-2.3
2,522,387	-	rlmA	LU632_RS13200	0.88	-0.3
2,522,550	+				+1.1
2,522,550	+				-0.1
2,522,551	-				+0.1
2,522,551	-				-0.3
2,522,558	+				+1.8
2,522,558	+				+5.7
2,522,573	-				-0.3
2,522,584	+		LU632_RS13205	0.12	-0.3
2,522,585	-		LU632_RS13205	0.13	-0.1
2,522,586	+		LU632_RS13205	0.13	-0.3
2,522,587	-		LU632_RS13205	0.14	-0.0
2,522,587	-		LU632_RS13205	0.14	-0.7
2,522,594	-		LU632_RS13205	0.17	-1.9
2,522,594	-		LU632_RS13205	0.17	+0.2
2,522,666	+		LU632_RS13205	0.56	-2.4
2,522,863	+				+0.2
2,523,107	-	cspE	LU632_RS13210	0.59	+3.5
2,523,136	-	cspE	LU632_RS13210	0.73	+2.5
2,523,150	+	cspE	LU632_RS13210	0.80	+0.2
2,523,151	-	cspE	LU632_RS13210	0.80	+0.4
2,523,180	+				+2.1
2,523,231	+				+3.8
2,523,231	+				+3.6
2,523,236	-				+2.8
2,523,256	-				-2.6
2,523,502	-				-0.9
2,523,597	-				-0.2
2,524,004	+		LU632_RS13215	0.14	-0.8
2,524,005	-		LU632_RS13215	0.14	-0.2
2,524,024	+		LU632_RS13215	0.16	+1.7
2,524,025	-		LU632_RS13215	0.16	-0.3
2,524,111	-		LU632_RS13215	0.25	-0.3
2,524,111	-		LU632_RS13215	0.25	+0.1