Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12850

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,445,267	+				-0.2
2,445,271	+				-1.3
2,445,303	-				-0.7
2,445,493	+				-0.4
2,445,542	-				-1.3
2,445,586	-				+0.8
2,445,626	+				+0.3
2,445,626	+				+2.6
2,445,626	+				+2.4
2,445,627	-				-2.6
2,445,658	+				-2.7
2,445,936	+				-2.4
2,446,118	+	cls	LU632_RS12850	0.22	-2.5
2,446,202	+	cls	LU632_RS12850	0.27	+0.6
2,446,498	+	cls	LU632_RS12850	0.48	-2.8
2,446,502	+	cls	LU632_RS12850	0.48	-1.9
2,446,508	-	cls	LU632_RS12850	0.48	-0.9
2,446,627	+	cls	LU632_RS12850	0.56	-1.4
2,446,689	+	cls	LU632_RS12850	0.61	-1.4
2,446,719	+	cls	LU632_RS12850	0.63	-0.4
2,447,017	-	cls	LU632_RS12850	0.83	-1.9
2,447,362	-		LU632_RS12855	0.17	+0.9
2,447,407	-		LU632_RS12855	0.31	-0.9
2,447,520	-		LU632_RS12855	0.65	+0.0
2,447,601	+				-2.5
2,447,602	-				-0.0
2,447,638	-				-0.4
2,447,765	+				+4.0
2,447,768	+				+1.0
2,447,768	+				+0.3
2,447,768	+				-0.1
2,447,768	+				+0.4
2,447,771	+				-0.4
2,447,771	+				-0.1
2,447,771	+				+0.8
2,448,021	+	oppF	LU632_RS12860	0.16	+0.2
2,448,021	+	oppF	LU632_RS12860	0.16	-0.7
2,448,022	-	oppF	LU632_RS12860	0.16	-1.3
2,448,083	+	oppF	LU632_RS12860	0.22	-2.2
2,448,086	-	oppF	LU632_RS12860	0.23	-2.3
2,448,107	-	oppF	LU632_RS12860	0.25	-1.7
2,448,118	+	oppF	LU632_RS12860	0.26	-0.7
2,448,118	+	oppF	LU632_RS12860	0.26	+2.2
2,448,119	-	oppF	LU632_RS12860	0.26	+0.7
2,448,148	+	oppF	LU632_RS12860	0.29	+2.4
2,448,149	-	oppF	LU632_RS12860	0.29	-1.2
2,448,149	-	oppF	LU632_RS12860	0.29	-0.9
2,448,203	+	oppF	LU632_RS12860	0.34	+1.4
2,448,203	+	oppF	LU632_RS12860	0.34	+0.9
2,448,204	-	oppF	LU632_RS12860	0.34	-1.7
2,448,207	+	oppF	LU632_RS12860	0.35	+0.1