Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12790

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,433,461	+				-0.4
2,433,527	+				+1.9
2,433,528	-				-0.1
2,433,576	+				+1.1
2,433,580	+				+0.5
2,433,589	+				+2.8
2,433,615	-				-0.1
2,433,671	-				+0.8
2,433,674	+				+0.6
2,433,675	-				-0.6
2,433,675	-				+1.6
2,433,768	-				-0.7
2,433,771	-				+0.8
2,433,793	-				+0.2
2,433,806	+				-0.6
2,433,806	+				+0.4
2,433,806	+				-0.3
2,433,807	-				+0.4
2,433,857	+				+0.2
2,433,858	-				+0.5
2,433,858	-				-0.4
2,433,948	-				-0.2
2,434,034	+		LU632_RS12785	0.10	+1.1
2,434,064	+		LU632_RS12785	0.18	-2.5
2,434,065	-		LU632_RS12785	0.18	+1.4
2,434,109	+		LU632_RS12785	0.29	+0.8
2,434,109	+		LU632_RS12785	0.29	-1.1
2,434,110	-		LU632_RS12785	0.30	-1.9
2,434,110	-		LU632_RS12785	0.30	+0.6
2,434,179	-		LU632_RS12785	0.47	+0.7
2,434,185	+		LU632_RS12785	0.49	+1.0
2,434,198	+		LU632_RS12785	0.52	-0.4
2,434,374	-				+0.9
2,434,374	-				+0.6
2,434,397	-				+0.1
2,434,474	+				-0.2
2,434,830	-		LU632_RS12790	0.35	-1.4
2,434,832	-		LU632_RS12790	0.36	-0.2
2,434,939	+		LU632_RS12790	0.44	+0.5
2,434,942	+		LU632_RS12790	0.45	-3.2
2,434,943	-		LU632_RS12790	0.45	-0.2
2,434,943	-		LU632_RS12790	0.45	-0.4
2,434,959	+		LU632_RS12790	0.46	+0.6
2,434,959	+		LU632_RS12790	0.46	+0.6
2,434,959	+		LU632_RS12790	0.46	+0.6
2,435,018	-		LU632_RS12790	0.51	+0.6
2,435,105	-		LU632_RS12790	0.58	-0.1
2,435,190	+		LU632_RS12790	0.65	+0.6
2,435,191	-		LU632_RS12790	0.65	+0.8
2,435,218	-		LU632_RS12790	0.67	-0.5
2,435,369	+		LU632_RS12790	0.79	+1.4
2,435,369	+		LU632_RS12790	0.79	-0.1
2,435,445	-		LU632_RS12790	0.86	+1.5
2,435,453	-		LU632_RS12790	0.86	-0.1
2,435,575	+				-1.4
2,435,596	+				-0.1
2,435,855	-				+1.2
2,435,912	+		LU632_RS12795	0.16	-0.6
2,435,989	+		LU632_RS12795	0.34	-2.4
2,436,174	+		LU632_RS12795	0.78	-1.4
2,436,209	+		LU632_RS12795	0.86	-0.7
2,436,209	+		LU632_RS12795	0.86	+1.9
2,436,210	-		LU632_RS12795	0.87	+0.6
2,436,213	+		LU632_RS12795	0.87	-0.4
2,436,213	+		LU632_RS12795	0.87	+0.2
2,436,214	-		LU632_RS12795	0.88	-1.8
2,436,246	+				-0.3
2,436,246	+				+1.5
2,436,247	-				-2.2
2,436,247	-				+1.2
2,436,247	-				-1.6
2,436,266	+				+0.5
2,436,267	-				-0.3
2,436,286	+				-0.9
2,436,286	+				-2.7
2,436,286	+				+0.3
2,436,287	-				+0.2
2,436,287	-				-0.4
2,436,287	-				-1.9
2,436,287	-				+4.3
2,436,311	+				-0.9
2,436,312	-				-3.2
2,436,352	-				+0.4
2,436,450	+		LU632_RS12800	0.22	-0.1
2,436,561	+		LU632_RS12800	0.37	-0.0
2,436,580	-		LU632_RS12800	0.40	-0.9