Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12575

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,388,949	+				+1.1
2,388,950	-				+0.5
2,389,019	-				+0.9
2,389,019	-				+0.0
2,389,020	+				+0.5
2,389,020	+				+1.0
2,389,020	+				-1.9
2,389,020	+				-0.3
2,389,020	+				-0.3
2,389,021	-				+2.4
2,389,021	-				-0.9
2,389,030	+				+0.7
2,389,030	+				-2.7
2,389,089	-				+0.5
2,389,104	-				+2.6
2,389,107	+				+0.6
2,389,145	+				-2.7
2,389,164	-				+4.7
2,389,164	-				-0.9
2,389,164	-				+1.8
2,389,301	+				+0.0
2,389,313	+				-1.9
2,389,314	-				+1.1
2,389,344	+				+0.7
2,389,352	+				-0.5
2,389,411	+				-0.9
2,389,412	-				-0.7
2,389,420	+				+1.0
2,389,421	-				+0.3
2,389,421	-				+0.4
2,389,591	+		LU632_RS12575	0.76	+2.2
2,389,592	-		LU632_RS12575	0.76	-0.9
2,389,593	+		LU632_RS12575	0.76	+2.0
2,389,668	+				+0.3
2,389,668	+				+1.2
2,389,669	-				-1.9
2,389,681	+				-1.3
2,389,684	+				+1.2
2,389,684	+				+0.7
2,389,685	-				+0.2
2,390,252	+				+0.1
2,390,316	-				+1.2
2,390,321	-				+1.1
2,390,380	+				+0.7
2,390,457	-				+1.9
2,390,478	+				+0.2
2,390,500	+				-0.5
2,390,511	+				-1.3
2,390,523	+				-2.2
2,390,524	-				-1.2
2,390,593	-				+1.0