Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12505

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,374,248	-	pyrF	LU632_RS12500	0.11	-5.8
2,374,253	-	pyrF	LU632_RS12500	0.12	-2.2
2,374,253	-	pyrF	LU632_RS12500	0.12	-2.4
2,374,254	+	pyrF	LU632_RS12500	0.12	-2.2
2,374,254	+	pyrF	LU632_RS12500	0.12	-2.2
2,374,333	+	pyrF	LU632_RS12500	0.23	-3.4
2,374,469	-	pyrF	LU632_RS12500	0.42	+0.6
2,374,523	+	pyrF	LU632_RS12500	0.49	-0.4
2,374,658	-	pyrF	LU632_RS12500	0.68	-1.0
2,374,658	-	pyrF	LU632_RS12500	0.68	-3.4
2,374,663	+	pyrF	LU632_RS12500	0.69	-4.1
2,374,664	-	pyrF	LU632_RS12500	0.69	-2.2
2,374,666	+	pyrF	LU632_RS12500	0.69	-1.4
2,374,667	-	pyrF	LU632_RS12500	0.69	-1.4
2,374,676	-	pyrF	LU632_RS12500	0.71	-4.5
2,374,676	-	pyrF	LU632_RS12500	0.71	-3.3
2,374,836	+				-4.1
2,374,841	+				-4.3
2,374,842	-				-4.3
2,374,842	-				-5.8
2,374,904	+				-3.1
2,374,944	+				-1.4