Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12355

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,348,670	+				-0.4
2,348,670	+				+0.6
2,348,670	+				-0.1
2,348,787	-				+1.1
2,348,805	+				+0.3
2,348,823	+				+1.5
2,348,823	+				+3.2
2,348,824	-				+0.1
2,348,824	-				-0.7
2,348,910	+		LU632_RS12345	0.54	+0.0
2,348,910	+		LU632_RS12345	0.54	+1.1
2,348,911	-		LU632_RS12345	0.54	+0.2
2,348,911	-		LU632_RS12345	0.54	-0.2
2,348,911	-		LU632_RS12345	0.54	-0.3
2,348,914	+		LU632_RS12345	0.56	-1.4
2,348,914	+		LU632_RS12345	0.56	-2.6
2,348,914	+		LU632_RS12345	0.56	-0.0
2,348,915	-		LU632_RS12345	0.56	-1.9
2,348,915	-		LU632_RS12345	0.56	-1.9
2,349,038	-				+1.1
2,349,093	+				+0.6
2,349,093	+				-1.9
2,349,093	+				+0.2
2,349,100	+				-0.4
2,349,101	-				-0.8
2,349,101	-				+0.6
2,349,101	-				-1.1
2,349,101	-				+0.4
2,349,136	+				-3.2
2,349,221	+				-1.6
2,349,228	-				+0.8
2,349,228	-				+0.2
2,349,335	+		LU632_RS12350	0.25	+0.6
2,349,484	+		LU632_RS12350	0.77	+2.0
2,349,540	+				+2.9