Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11805

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,241,920	+				+1.1
2,241,921	-				+1.1
2,242,047	+		LU632_RS11800	0.13	+1.4
2,242,047	+		LU632_RS11800	0.13	+1.9
2,242,047	+		LU632_RS11800	0.13	-0.6
2,242,047	+		LU632_RS11800	0.13	+0.4
2,242,047	+		LU632_RS11800	0.13	+0.1
2,242,048	-		LU632_RS11800	0.13	+1.0
2,242,051	+		LU632_RS11800	0.14	-0.0
2,242,051	+		LU632_RS11800	0.14	-1.4
2,242,125	+		LU632_RS11800	0.23	+1.6
2,242,126	-		LU632_RS11800	0.23	-2.5
2,242,126	-		LU632_RS11800	0.23	-0.5
2,242,190	-		LU632_RS11800	0.31	-2.2
2,242,387	+		LU632_RS11800	0.55	-2.2
2,242,387	+		LU632_RS11800	0.55	-0.4
2,242,519	+		LU632_RS11800	0.71	+0.5
2,242,627	-		LU632_RS11800	0.84	+1.2
2,242,912	+				-0.6
2,242,913	-				+1.1
2,242,961	+	terL	LU632_RS11805	0.12	+1.3
2,242,961	+	terL	LU632_RS11805	0.12	+1.0
2,242,961	+	terL	LU632_RS11805	0.12	-0.2
2,242,962	-	terL	LU632_RS11805	0.12	+1.6
2,243,127	-	terL	LU632_RS11805	0.22	+1.1
2,243,265	-	terL	LU632_RS11805	0.30	-0.3
2,243,703	+	terL	LU632_RS11805	0.56	-1.0
2,243,704	-	terL	LU632_RS11805	0.56	-1.2
2,244,009	+	terL	LU632_RS11805	0.74	-0.4
2,244,222	+	terL	LU632_RS11805	0.87	-0.2
2,244,223	-	terL	LU632_RS11805	0.87	+0.5
2,244,223	-	terL	LU632_RS11805	0.87	-1.0
2,244,270	+	terL	LU632_RS11805	0.89	-1.4
2,244,271	-	terL	LU632_RS11805	0.89	-2.0
2,244,271	-	terL	LU632_RS11805	0.89	-0.5
2,244,275	-	terL	LU632_RS11805	0.90	-1.4
2,244,450	+				+2.3
2,244,450	+				+0.6
2,244,450	+				+0.6
2,244,451	-				+0.8
2,244,451	-				+0.0
2,244,451	-				+1.0
2,244,451	-				-2.2
2,244,451	-				-0.0
2,244,580	-		LU632_RS11810	0.52	+2.6
2,244,589	+		LU632_RS11810	0.56	+1.4
2,244,590	-		LU632_RS11810	0.57	-0.1
2,244,590	-		LU632_RS11810	0.57	+2.2
2,244,605	-		LU632_RS11810	0.63	+0.2
2,244,605	-		LU632_RS11810	0.63	-2.4
2,244,605	-		LU632_RS11810	0.63	-1.1
2,244,607	-		LU632_RS11810	0.64	+0.8
2,244,675	-				-1.5
2,244,703	+				-1.0
2,244,704	-				+0.4
2,244,704	-				+1.5
2,244,722	-				+1.0
2,244,724	+				-1.9
2,244,724	+				+0.2
2,244,725	-				-3.5
2,244,725	-				+0.6
2,244,756	-		LU632_RS11815	0.14	+1.8
2,244,759	+		LU632_RS11815	0.15	+0.6
2,244,893	+		LU632_RS11815	0.40	-2.2
2,244,894	-		LU632_RS11815	0.41	-0.4
2,244,966	+		LU632_RS11815	0.54	+0.0
2,245,160	+				-1.4
2,245,161	-				+1.0
2,245,161	-				+1.2
2,245,161	-				-1.4
2,245,236	+		LU632_RS11820	0.13	+0.6
2,245,236	+		LU632_RS11820	0.13	+1.4
2,245,236	+		LU632_RS11820	0.13	-1.2
2,245,238	+		LU632_RS11820	0.14	+0.2
2,245,339	+		LU632_RS11820	0.55	-2.4
2,245,340	-		LU632_RS11820	0.55	+0.3
2,245,415	+		LU632_RS11820	0.85	-1.0