Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11545

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,201,049	+		LU632_RS11540	0.42	-1.6
2,201,076	+		LU632_RS11540	0.44	+0.1
2,201,076	+		LU632_RS11540	0.44	+1.3
2,201,077	-		LU632_RS11540	0.44	-1.9
2,201,079	+		LU632_RS11540	0.44	+1.8
2,201,105	+		LU632_RS11540	0.46	+0.0
2,201,105	+		LU632_RS11540	0.46	+1.9
2,201,105	+		LU632_RS11540	0.46	-0.3
2,201,105	+		LU632_RS11540	0.46	-0.6
2,201,105	+		LU632_RS11540	0.46	-0.3
2,201,105	+		LU632_RS11540	0.46	+0.8
2,201,106	-		LU632_RS11540	0.46	-0.2
2,201,106	-		LU632_RS11540	0.46	+1.3
2,201,106	-		LU632_RS11540	0.46	-0.5
2,201,106	-		LU632_RS11540	0.46	-0.6
2,201,106	-		LU632_RS11540	0.46	-3.1
2,201,107	+		LU632_RS11540	0.46	-0.0
2,201,108	-		LU632_RS11540	0.46	-0.7
2,201,108	-		LU632_RS11540	0.46	-2.0
2,201,180	+		LU632_RS11540	0.51	-1.0
2,201,268	+		LU632_RS11540	0.57	-3.2
2,201,414	-		LU632_RS11540	0.68	+1.9
2,201,418	+		LU632_RS11540	0.68	+0.6
2,201,481	+		LU632_RS11540	0.73	+1.2
2,201,522	-		LU632_RS11540	0.76	+1.2
2,201,758	+				+0.6
2,201,804	+				+0.6
2,201,805	-				-2.6
2,201,880	+				-0.1
2,201,881	-				+0.4
2,201,881	-				+2.9
2,201,882	+				-0.4
2,201,882	+				-3.4
2,201,882	+				-0.3
2,201,882	+				-1.4
2,201,882	+				+0.0
2,201,882	+				+2.9
2,201,882	+				+2.2
2,201,883	-				+0.2
2,201,883	-				-0.2
2,201,883	-				-0.2
2,201,883	-				+0.6
2,201,883	-				-0.7
2,201,913	+				-0.6
2,201,914	-				+0.6
2,201,914	-				+1.5
2,201,962	+	pspD	LU632_RS11545	0.17	-0.6
2,201,963	-	pspD	LU632_RS11545	0.17	+1.1
2,202,060	+	pspD	LU632_RS11545	0.60	-1.7
2,202,060	+	pspD	LU632_RS11545	0.60	+2.0
2,202,060	+	pspD	LU632_RS11545	0.60	+2.0
2,202,061	-	pspD	LU632_RS11545	0.61	+0.8
2,202,061	-	pspD	LU632_RS11545	0.61	+2.1
2,202,064	+	pspD	LU632_RS11545	0.62	+1.4
2,202,065	-	pspD	LU632_RS11545	0.63	+1.6
2,202,065	-	pspD	LU632_RS11545	0.63	-1.0
2,202,198	-				+5.2
2,202,294	-	pspC	LU632_RS11550	0.28	-0.9
2,202,315	-	pspC	LU632_RS11550	0.34	-0.4
2,202,407	-	pspC	LU632_RS11550	0.60	-0.3
2,202,407	-	pspC	LU632_RS11550	0.60	-1.3
2,202,411	-	pspC	LU632_RS11550	0.61	-2.4
2,202,471	+	pspC	LU632_RS11550	0.78	+0.6
2,202,600	+	pspB	LU632_RS11555	0.25	-1.2
2,202,600	+	pspB	LU632_RS11555	0.25	-4.0
2,202,631	+	pspB	LU632_RS11555	0.38	-1.0
2,202,632	-	pspB	LU632_RS11555	0.39	-3.9
2,202,696	-	pspB	LU632_RS11555	0.67	+0.6
2,202,737	-	pspB	LU632_RS11555	0.85	-1.4
2,202,761	-				+0.4
2,202,761	-				+1.6
2,202,790	-				+1.4
2,202,811	+				+4.6
2,202,814	+				+0.3
2,202,814	+				-0.4
2,202,947	+	pspA	LU632_RS11560	0.20	-3.1
2,202,948	-	pspA	LU632_RS11560	0.20	-1.9
2,202,948	-	pspA	LU632_RS11560	0.20	-0.2
2,203,114	-	pspA	LU632_RS11560	0.45	+1.2