Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11445

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,184,487	+				+0.6
2,184,624	+				+1.9
2,184,627	+				-0.8
2,184,638	+				-1.7
2,184,686	+				+1.8
2,184,819	+				+1.8
2,184,819	+				-0.4
2,184,820	-				+0.6
2,184,820	-				-1.2
2,184,838	-				-0.4
2,184,979	+	ydgH	LU632_RS11445	0.21	-0.4
2,184,979	+	ydgH	LU632_RS11445	0.21	-0.2
2,184,979	+	ydgH	LU632_RS11445	0.21	-2.6
2,184,979	+	ydgH	LU632_RS11445	0.21	-2.5
2,184,979	+	ydgH	LU632_RS11445	0.21	+1.3
2,184,980	-	ydgH	LU632_RS11445	0.21	-1.0
2,184,999	+	ydgH	LU632_RS11445	0.23	-1.0
2,185,047	+	ydgH	LU632_RS11445	0.29	-0.5
2,185,201	-	ydgH	LU632_RS11445	0.45	+0.4
2,185,236	+	ydgH	LU632_RS11445	0.48	-2.0
2,185,279	+	ydgH	LU632_RS11445	0.53	-0.3
2,185,280	-	ydgH	LU632_RS11445	0.53	-0.0
2,185,280	-	ydgH	LU632_RS11445	0.53	-1.7
2,185,280	-	ydgH	LU632_RS11445	0.53	-3.0
2,185,291	+	ydgH	LU632_RS11445	0.54	+2.8
2,185,295	+	ydgH	LU632_RS11445	0.55	-0.6
2,185,295	+	ydgH	LU632_RS11445	0.55	-1.4
2,185,295	+	ydgH	LU632_RS11445	0.55	+0.3
2,185,295	+	ydgH	LU632_RS11445	0.55	-0.2
2,185,295	+	ydgH	LU632_RS11445	0.55	-2.0
2,185,295	+	ydgH	LU632_RS11445	0.55	+0.1
2,185,296	-	ydgH	LU632_RS11445	0.55	-0.0
2,185,494	+	ydgH	LU632_RS11445	0.75	-2.4
2,185,500	+	ydgH	LU632_RS11445	0.76	-0.8
2,185,655	-				-0.6
2,185,655	-				+0.1
2,185,655	-				-0.4
2,185,768	+				+0.6
2,185,782	-				-0.1
2,185,796	+				+0.4
2,185,796	+				+0.2
2,185,815	+				-1.7
2,185,887	-				-1.7
2,185,887	-				-1.2
2,185,979	-				+0.5
2,186,013	+		LU632_RS11450	0.17	-0.7
2,186,014	-		LU632_RS11450	0.17	+0.1
2,186,027	-		LU632_RS11450	0.20	+1.0
2,186,055	+		LU632_RS11450	0.27	+3.8
2,186,143	+		LU632_RS11450	0.48	-1.0
2,186,144	-		LU632_RS11450	0.49	+4.1
2,186,171	-		LU632_RS11450	0.55	-0.4
2,186,171	-		LU632_RS11450	0.55	-1.0
2,186,171	-		LU632_RS11450	0.55	+0.9
2,186,380	+				+1.8
2,186,389	-				+1.3
2,186,428	-				-0.0
2,186,428	-				-2.7
2,186,441	+				+2.9
2,186,443	+				-1.0
2,186,446	+				+0.2
2,186,478	-				-0.3
2,186,480	+				+0.6
2,186,523	+				-1.4
2,186,523	+				+2.5
2,186,523	+				-1.7
2,186,540	-				-2.0
2,186,547	+				-0.4
2,186,617	+	rstA	LU632_RS11455	0.11	+0.6