Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11225

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,146,447	-				-0.5
2,146,466	+				+0.7
2,146,466	+				+0.4
2,146,466	+				+1.8
2,146,467	-				-0.7
2,146,467	-				+2.4
2,146,467	-				+1.2
2,146,576	+				-1.5
2,146,577	-				+1.4
2,146,598	+				-1.5
2,146,726	+	rnt	LU632_RS11220	0.14	+0.5
2,146,811	+	rnt	LU632_RS11220	0.27	-0.8
2,146,812	-	rnt	LU632_RS11220	0.27	-0.5
2,146,812	-	rnt	LU632_RS11220	0.27	-1.4
2,146,812	-	rnt	LU632_RS11220	0.27	+3.7
2,146,990	+	rnt	LU632_RS11220	0.55	+1.0
2,146,990	+	rnt	LU632_RS11220	0.55	-1.7
2,146,990	+	rnt	LU632_RS11220	0.55	-0.6
2,146,991	-	rnt	LU632_RS11220	0.55	-2.0
2,146,991	-	rnt	LU632_RS11220	0.55	-0.9
2,146,991	-	rnt	LU632_RS11220	0.55	-1.7
2,146,991	-	rnt	LU632_RS11220	0.55	-1.4
2,147,015	+	rnt	LU632_RS11220	0.59	+1.6
2,147,028	-	rnt	LU632_RS11220	0.61	-2.1
2,147,036	-	rnt	LU632_RS11220	0.62	-2.1
2,147,075	+	rnt	LU632_RS11220	0.68	-0.2
2,147,398	+				+1.1
2,147,398	+				+1.2
2,147,399	-				-0.6
2,147,399	-				-1.0
2,147,437	+	gloA	LU632_RS11225	0.12	-1.2
2,147,438	-	gloA	LU632_RS11225	0.12	-1.0
2,147,598	+	gloA	LU632_RS11225	0.52	-3.1
2,147,598	+	gloA	LU632_RS11225	0.52	+2.2
2,147,599	-	gloA	LU632_RS11225	0.52	+2.6
2,147,599	-	gloA	LU632_RS11225	0.52	-2.0
2,147,599	-	gloA	LU632_RS11225	0.52	+3.2
2,147,603	-	gloA	LU632_RS11225	0.53	-0.4
2,147,657	-	gloA	LU632_RS11225	0.66	-1.4
2,147,679	+	gloA	LU632_RS11225	0.72	-1.1
2,147,680	-	gloA	LU632_RS11225	0.72	+0.1
2,147,683	+	gloA	LU632_RS11225	0.73	-1.4
2,147,683	+	gloA	LU632_RS11225	0.73	-0.7
2,147,684	-	gloA	LU632_RS11225	0.73	-0.9
2,147,684	-	gloA	LU632_RS11225	0.73	+2.5
2,147,684	-	gloA	LU632_RS11225	0.73	-1.0
2,147,684	-	gloA	LU632_RS11225	0.73	+0.6
2,147,684	-	gloA	LU632_RS11225	0.73	-1.0
2,147,686	-	gloA	LU632_RS11225	0.73	+0.3
2,147,756	+				-0.3
2,147,780	-				-1.8
2,147,780	-				-1.9
2,147,795	-				+0.2
2,147,795	-				-1.0
2,147,843	+				+0.1
2,147,844	-				+1.9
2,147,865	-				-1.2
2,147,879	-				-0.9
2,147,883	-				-0.8
2,147,886	+				-1.4
2,147,886	+				+0.4
2,147,886	+				-1.0
2,147,970	+		LU632_RS11230	0.18	+0.7
2,147,972	+		LU632_RS11230	0.19	+0.0
2,147,972	+		LU632_RS11230	0.19	+0.2
2,147,972	+		LU632_RS11230	0.19	+0.6
2,148,008	+		LU632_RS11230	0.26	+0.1
2,148,008	+		LU632_RS11230	0.26	+0.7
2,148,008	+		LU632_RS11230	0.26	-0.2
2,148,008	+		LU632_RS11230	0.26	-1.0
2,148,008	+		LU632_RS11230	0.26	-1.9
2,148,008	+		LU632_RS11230	0.26	+3.1
2,148,008	+		LU632_RS11230	0.26	+1.5
2,148,009	-		LU632_RS11230	0.27	+0.4
2,148,009	-		LU632_RS11230	0.27	-0.8
2,148,144	-		LU632_RS11230	0.54	-1.7
2,148,180	-		LU632_RS11230	0.62	+0.6
2,148,180	-		LU632_RS11230	0.62	-2.7
2,148,181	+		LU632_RS11230	0.62	+1.8
2,148,182	-		LU632_RS11230	0.62	-0.4
2,148,185	+		LU632_RS11230	0.63	+1.6
2,148,186	-		LU632_RS11230	0.63	-0.4
2,148,218	+		LU632_RS11230	0.70	+1.1
2,148,218	+		LU632_RS11230	0.70	+2.9
2,148,264	+		LU632_RS11230	0.79	+0.6
2,148,264	+		LU632_RS11230	0.79	+0.2
2,148,264	+		LU632_RS11230	0.79	-1.8
2,148,264	+		LU632_RS11230	0.79	+1.4
2,148,265	-		LU632_RS11230	0.80	+1.3
2,148,265	-		LU632_RS11230	0.80	-0.5
2,148,274	-		LU632_RS11230	0.81	+0.3
2,148,286	+		LU632_RS11230	0.84	+0.2
2,148,287	-		LU632_RS11230	0.84	+1.8
2,148,475	+				+0.2
2,148,476	-				-3.3
2,148,476	-				-0.0
2,148,478	-				+0.7
2,148,559	-				-3.0
2,148,577	-				+1.3
2,148,718	+		LU632_RS11235	0.51	-2.4
2,148,718	+		LU632_RS11235	0.51	-1.1
2,148,719	-		LU632_RS11235	0.51	+0.6
2,148,727	-		LU632_RS11235	0.55	-1.9
2,148,771	-		LU632_RS11235	0.73	+2.4