Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11160

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,134,613	+	pykF	LU632_RS11145	0.66	+1.4
2,134,763	-	pykF	LU632_RS11145	0.77	+3.2
2,134,814	-	pykF	LU632_RS11145	0.81	+0.6
2,134,814	-	pykF	LU632_RS11145	0.81	-0.4
2,134,942	+	pykF	LU632_RS11145	0.90	-0.4
2,135,006	-				+0.3
2,135,095	-				-2.2
2,135,101	+				-0.5
2,135,240	-		LU632_RS11150	0.76	-1.0
2,135,324	+				+0.3
2,135,374	+				+0.9
2,135,452	+		LU632_RS11155	0.13	+0.1
2,135,510	+		LU632_RS11155	0.88	-0.8
2,135,882	-				-0.5
2,135,890	+				-0.3
2,135,933	-				-0.8
2,135,997	+		LU632_RS11170	0.12	+1.1
2,136,025	+		LU632_RS11170	0.14	+1.5
2,136,037	+		LU632_RS11170	0.15	+0.6
2,136,050	-		LU632_RS11170	0.16	-1.1
2,136,178	-		LU632_RS11170	0.25	+0.3
2,136,381	-		LU632_RS11170	0.40	+0.4
2,136,506	+		LU632_RS11170	0.49	-0.4
2,136,507	-		LU632_RS11170	0.49	+2.5
2,136,507	-		LU632_RS11170	0.49	-2.0
2,136,507	-		LU632_RS11170	0.49	+1.0
2,136,507	-		LU632_RS11170	0.49	+0.0
2,136,526	+		LU632_RS11170	0.50	+0.5
2,136,526	+		LU632_RS11170	0.50	+0.9