Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10495

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,008,122	+				-0.7
2,008,126	+				+0.7
2,008,186	-				-0.8
2,008,204	-		LU632_RS10495	0.12	+0.5
2,008,227	-		LU632_RS10495	0.16	-1.1
2,008,227	-		LU632_RS10495	0.16	+1.0
2,008,299	+		LU632_RS10495	0.27	+0.4
2,008,299	+		LU632_RS10495	0.27	+1.0
2,008,299	+		LU632_RS10495	0.27	-0.3
2,008,299	+		LU632_RS10495	0.27	-0.4
2,008,300	-		LU632_RS10495	0.27	+3.0
2,008,300	-		LU632_RS10495	0.27	-0.1
2,008,300	-		LU632_RS10495	0.27	-0.2
2,008,317	-		LU632_RS10495	0.30	+0.4
2,008,391	+		LU632_RS10495	0.41	+1.2
2,008,462	+		LU632_RS10495	0.52	-0.1
2,008,477	+		LU632_RS10495	0.55	+0.8
2,008,490	-		LU632_RS10495	0.57	+1.3
2,008,573	-		LU632_RS10495	0.70	-0.5
2,008,573	-		LU632_RS10495	0.70	+1.6
2,008,597	-		LU632_RS10495	0.73	+3.4
2,008,685	-		LU632_RS10495	0.87	+2.6
2,008,687	-		LU632_RS10495	0.87	+3.5
2,008,846	+				+0.7
2,008,846	+				-2.8
2,008,846	+				+0.3
2,008,847	-				-1.3
2,008,847	-				+1.6
2,008,869	+				-0.5
2,008,870	-				+3.3
2,008,873	+				+0.3
2,008,873	+				-0.6
2,008,874	-				+0.3
2,008,874	-				-1.3
2,008,874	-				+2.5
2,008,874	-				+0.6
2,008,909	-		LU632_RS10500	0.15	+0.7
2,008,914	+		LU632_RS10500	0.19	+0.7
2,008,915	-		LU632_RS10500	0.19	+0.7
2,008,915	-		LU632_RS10500	0.19	-0.2
2,008,932	+		LU632_RS10500	0.30	+0.7
2,008,933	-		LU632_RS10500	0.31	+0.7
2,008,933	-		LU632_RS10500	0.31	+0.0
2,009,066	+				-0.8
2,009,067	-				+2.3
2,009,074	+				-1.1
2,009,075	-				-0.9
2,009,078	+				+1.1
2,009,078	+				+0.2
2,009,133	+		LU632_RS10505	0.12	+0.7
2,009,215	+		LU632_RS10505	0.25	+0.7
2,009,237	-		LU632_RS10505	0.29	+0.8
2,009,237	-		LU632_RS10505	0.29	+1.3
2,009,237	-		LU632_RS10505	0.29	-3.9
2,009,238	+		LU632_RS10505	0.29	-0.4
2,009,238	+		LU632_RS10505	0.29	-0.2
2,009,239	-		LU632_RS10505	0.29	-1.9
2,009,239	-		LU632_RS10505	0.29	-2.1
2,009,239	-		LU632_RS10505	0.29	-0.3
2,009,239	-		LU632_RS10505	0.29	+2.0
2,009,310	+		LU632_RS10505	0.41	-1.2
2,009,310	+		LU632_RS10505	0.41	+0.9
2,009,311	-		LU632_RS10505	0.42	-1.1
2,009,318	-		LU632_RS10505	0.43	+0.1
2,009,378	-		LU632_RS10505	0.53	+0.8
2,009,416	+		LU632_RS10505	0.59	+1.6
2,009,416	+		LU632_RS10505	0.59	-0.0
2,009,438	+		LU632_RS10505	0.63	-0.9
2,009,438	+		LU632_RS10505	0.63	-0.4
2,009,438	+		LU632_RS10505	0.63	+1.3
2,009,439	-		LU632_RS10505	0.63	+1.6
2,009,499	-		LU632_RS10505	0.73	+2.9
2,009,539	+		LU632_RS10505	0.80	-0.5
2,009,542	+		LU632_RS10505	0.80	+1.8
2,009,594	+		LU632_RS10505	0.89	-0.5
2,009,594	+		LU632_RS10505	0.89	-0.1
2,009,676	+				+1.3
2,009,740	-				-1.0