Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10270

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,959,987	+	mdoC	LU632_RS10265	0.36	-0.6
1,959,987	+	mdoC	LU632_RS10265	0.36	+0.5
1,959,988	-	mdoC	LU632_RS10265	0.36	-0.7
1,960,010	+	mdoC	LU632_RS10265	0.38	-0.7
1,960,054	+	mdoC	LU632_RS10265	0.42	-2.1
1,960,074	-	mdoC	LU632_RS10265	0.44	-1.6
1,960,074	-	mdoC	LU632_RS10265	0.44	-0.6
1,960,074	-	mdoC	LU632_RS10265	0.44	-0.2
1,960,108	-	mdoC	LU632_RS10265	0.47	-0.6
1,960,111	+	mdoC	LU632_RS10265	0.47	+2.2
1,960,111	+	mdoC	LU632_RS10265	0.47	+0.1
1,960,151	+	mdoC	LU632_RS10265	0.51	+0.5
1,960,178	-	mdoC	LU632_RS10265	0.53	+0.1
1,960,199	+	mdoC	LU632_RS10265	0.55	-0.7
1,960,199	+	mdoC	LU632_RS10265	0.55	-1.8
1,960,308	+	mdoC	LU632_RS10265	0.65	-0.2
1,960,309	-	mdoC	LU632_RS10265	0.65	+1.8
1,960,318	+	mdoC	LU632_RS10265	0.66	-0.2
1,960,409	-	mdoC	LU632_RS10265	0.74	+1.9
1,960,433	-	mdoC	LU632_RS10265	0.76	-0.8
1,960,447	+	mdoC	LU632_RS10265	0.77	-1.2
1,960,470	+	mdoC	LU632_RS10265	0.79	-0.2
1,960,471	-	mdoC	LU632_RS10265	0.79	-0.8
1,960,471	-	mdoC	LU632_RS10265	0.79	+2.4
1,960,491	-	mdoC	LU632_RS10265	0.81	+0.8
1,960,542	+	mdoC	LU632_RS10265	0.86	-1.7
1,960,558	-	mdoC	LU632_RS10265	0.87	+1.2
1,960,652	+				-2.6
1,960,652	+				+1.4
1,960,653	-				-1.2
1,960,705	-				-2.9
1,960,774	+				+0.5
1,960,792	+				+0.8
1,960,792	+				-2.0
1,960,792	+				+0.8
1,960,792	+				+0.8
1,960,792	+				-2.6
1,960,793	-				+0.8
1,960,793	-				-2.7
1,960,793	-				-2.6
1,960,793	-				+1.9
1,960,793	-				+1.4
1,960,793	-				-0.6
1,960,794	+				-2.1
1,960,798	-				+0.3
1,960,819	+				-0.6
1,960,819	+				-0.7
1,960,823	+				-2.8
1,960,824	-				+0.9
1,960,872	-				-0.6
1,961,239	-		LU632_RS10270	0.20	-2.2
1,961,735	+		LU632_RS10270	0.51	-2.1
1,962,117	+		LU632_RS10270	0.75	-2.1
1,962,118	-		LU632_RS10270	0.75	+0.8
1,962,212	+		LU632_RS10270	0.81	-2.6
1,962,216	-		LU632_RS10270	0.81	+0.8
1,962,401	+				-1.8
1,962,492	+				-2.7
1,962,538	+				-1.8
1,962,538	+				-2.7
1,963,102	+	mdoH	LU632_RS10275	0.23	+0.8
1,963,103	-	mdoH	LU632_RS10275	0.23	+0.8
1,963,103	-	mdoH	LU632_RS10275	0.23	+0.2
1,963,216	+	mdoH	LU632_RS10275	0.28	-1.6
1,963,217	-	mdoH	LU632_RS10275	0.28	+0.8
1,963,221	+	mdoH	LU632_RS10275	0.28	-1.8
1,963,254	+	mdoH	LU632_RS10275	0.29	-1.8
1,963,400	-	mdoH	LU632_RS10275	0.35	-2.2