Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10170

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,947,273	+				-0.6
1,947,273	+				+0.8
1,947,273	+				+0.6
1,947,273	+				+0.2
1,947,273	+				-0.5
1,947,282	+				+0.2
1,947,282	+				+0.6
1,947,286	+				-1.1
1,947,286	+				+1.1
1,947,337	-				+1.4
1,947,337	-				-0.2
1,947,433	+				+0.3
1,947,441	+				-0.2
1,947,465	-				-2.2
1,947,465	-				-1.7
1,947,495	-				+1.0
1,947,504	-				-2.8
1,947,504	-				+1.1
1,947,504	-				+0.9
1,947,554	-				-0.2
1,947,570	+				-0.8
1,947,571	-				-1.7
1,947,665	+				+0.3
1,947,801	+				-2.4
1,947,803	+				+0.8
1,947,803	+				+0.8
1,947,807	+				-0.2
1,947,845	+				-2.1
1,947,846	-				+0.3
1,947,868	+				+0.8
1,948,015	+				-2.8
1,948,090	+				+0.1
1,948,091	-				-0.5
1,948,145	-		LU632_RS10170	0.20	-0.8
1,948,215	+		LU632_RS10170	0.37	+2.1
1,948,424	+		LU632_RS10170	0.90	+1.9
1,948,425	-				+4.9
1,948,425	-				-1.5
1,948,426	+				+2.9
1,948,427	-				+1.9
1,948,452	+				-1.8
1,948,491	+				+0.3
1,948,675	+				+1.2
1,948,760	-				+2.5
1,948,804	+				+3.1
1,948,805	-				+2.0
1,948,810	-				+0.6
1,948,817	+				+0.6
1,948,818	-				+2.5
1,948,821	+				+2.6
1,948,838	+				+3.0
1,948,838	+				+0.3
1,948,838	+				+1.5
1,948,944	+		LU632_RS10180	0.21	+1.5
1,949,212	-		LU632_RS10180	0.64	+5.2
1,949,317	+		LU632_RS10180	0.81	+0.6
1,949,317	+		LU632_RS10180	0.81	+3.1