Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10135

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,938,864	+				-3.5
1,938,992	+		LU632_RS10135	0.11	+0.3
1,938,992	+		LU632_RS10135	0.11	-1.9
1,939,056	-		LU632_RS10135	0.39	+1.2
1,939,056	-		LU632_RS10135	0.39	+0.4
1,939,096	+		LU632_RS10135	0.56	-3.8
1,939,140	-		LU632_RS10135	0.75	-0.6
1,939,179	-				+0.5
1,939,251	+				-0.9
1,939,252	-				-3.1
1,939,252	-				+0.3
1,939,364	-	wrbA	LU632_RS10140	0.24	+0.7
1,939,364	-	wrbA	LU632_RS10140	0.24	-0.1
1,939,504	-	wrbA	LU632_RS10140	0.48	+3.7
1,939,608	+	wrbA	LU632_RS10140	0.65	+0.7
1,939,716	-	wrbA	LU632_RS10140	0.83	-1.3
1,939,837	-				-2.1
1,939,860	-				+0.2
1,939,860	-				+1.1
1,939,897	-				-1.0
1,939,955	+				-0.0
1,939,956	-				-1.5
1,939,956	-				+0.4
1,939,957	+				-1.6
1,939,957	+				-0.7
1,939,957	+				+0.5
1,939,973	+				+1.9
1,939,985	-				-1.9
1,939,985	-				-1.1
1,940,002	+				-0.9
1,940,002	+				-0.9
1,940,151	-				+0.9
1,940,180	-				-0.6