Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10010

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,914,280	-				+2.4
1,914,281	+				-1.8
1,914,281	+				-2.1
1,914,282	-				+1.1
1,914,282	-				-0.2
1,914,282	-				+3.2
1,914,324	-				-2.3
1,914,372	-				-2.3
1,914,389	+				-0.9
1,914,409	-				+0.9
1,914,409	-				-0.5
1,914,559	+	matP	LU632_RS10005	0.10	+1.3
1,914,559	+	matP	LU632_RS10005	0.10	-0.7
1,914,560	-	matP	LU632_RS10005	0.10	+0.7
1,914,602	-	matP	LU632_RS10005	0.19	-0.2
1,914,602	-	matP	LU632_RS10005	0.19	+1.7
1,914,633	-	matP	LU632_RS10005	0.26	+0.9
1,914,809	+	matP	LU632_RS10005	0.62	-1.2
1,914,809	+	matP	LU632_RS10005	0.62	+4.8
1,914,810	-	matP	LU632_RS10005	0.63	+1.8
1,914,810	-	matP	LU632_RS10005	0.63	-1.6
1,914,846	+	matP	LU632_RS10005	0.70	+0.8
1,914,846	+	matP	LU632_RS10005	0.70	-2.2
1,914,847	-	matP	LU632_RS10005	0.70	+2.2
1,914,866	+	matP	LU632_RS10005	0.74	+1.4
1,914,876	-	matP	LU632_RS10005	0.77	+1.2
1,914,939	-	matP	LU632_RS10005	0.90	-1.6
1,914,950	+				+0.2
1,914,951	-				-2.4
1,915,007	+				-0.5
1,915,023	-				-3.2
1,915,087	+				+1.1
1,915,149	+				-1.8
1,915,151	+				-2.8
1,915,152	-				-2.0
1,915,154	+				-0.2
1,916,420	+				-2.2
1,916,420	+				-0.2
1,916,421	-				-0.1
1,916,423	-				+0.1
1,916,478	-				+1.3
1,916,523	+				+0.4
1,916,524	-				+0.8
1,916,579	-				+0.1
1,916,651	+	sulA	LU632_RS10015	0.16	+0.5
1,916,659	-	sulA	LU632_RS10015	0.17	-0.1
1,916,674	-	sulA	LU632_RS10015	0.20	-0.1
1,916,746	+	sulA	LU632_RS10015	0.34	-0.2
1,916,786	+	sulA	LU632_RS10015	0.42	-2.2
1,916,809	-	sulA	LU632_RS10015	0.47	-0.3
1,916,911	-	sulA	LU632_RS10015	0.67	+1.6
1,916,947	-	sulA	LU632_RS10015	0.74	+1.2
1,916,947	-	sulA	LU632_RS10015	0.74	+0.8
1,916,982	+	sulA	LU632_RS10015	0.81	+2.8
1,916,983	-	sulA	LU632_RS10015	0.81	+0.1
1,917,023	+	sulA	LU632_RS10015	0.89	+0.9
1,917,024	-	sulA	LU632_RS10015	0.89	+0.6
1,917,024	-	sulA	LU632_RS10015	0.89	+0.8
1,917,024	-	sulA	LU632_RS10015	0.89	+0.6
1,917,200	+				+0.5
1,917,200	+				+1.3
1,917,201	-				-0.6