Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09520

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,801,416	-				-1.1
1,801,425	+				-2.8
1,801,459	-				-0.5
1,802,127	+				+0.5
1,802,128	-				-0.9
1,802,152	+				-0.3
1,802,152	+				+1.5
1,802,153	-				-0.7
1,802,153	-				+0.0
1,802,240	+				-0.6
1,802,297	+				+1.5
1,802,298	-				-1.2
1,802,298	-				+0.6
1,802,303	-				+1.2
1,802,399	-				+2.0
1,802,459	+		LU632_RS09520	0.26	+1.2
1,802,460	-		LU632_RS09520	0.27	+1.2
1,802,480	+		LU632_RS09520	0.37	+0.2
1,802,582	+				+0.1
1,802,689	+				+0.8
1,802,690	-				+0.6
1,802,691	+				-1.5
1,802,692	-				+0.3
1,802,716	+				+1.5
1,802,717	-				+0.2
1,802,769	-				+1.8
1,802,821	-				+0.5
1,802,949	+		LU632_RS09525	0.12	+0.3
1,802,998	+		LU632_RS09525	0.15	-0.8
1,802,998	+		LU632_RS09525	0.15	-2.5
1,803,070	+		LU632_RS09525	0.19	-1.2
1,803,070	+		LU632_RS09525	0.19	+2.2
1,803,071	-		LU632_RS09525	0.19	-1.1
1,803,071	-		LU632_RS09525	0.19	-1.0
1,803,071	-		LU632_RS09525	0.19	+0.3
1,803,148	+		LU632_RS09525	0.24	-0.6
1,803,192	+		LU632_RS09525	0.27	+0.0
1,803,330	+		LU632_RS09525	0.36	-0.8
1,803,411	+		LU632_RS09525	0.41	+0.8
1,803,472	+		LU632_RS09525	0.44	-0.2
1,803,472	+		LU632_RS09525	0.44	-0.5
1,803,472	+		LU632_RS09525	0.44	+1.3
1,803,473	-		LU632_RS09525	0.45	-0.2
1,803,473	-		LU632_RS09525	0.45	-1.5
1,803,481	+		LU632_RS09525	0.45	-1.5
1,803,481	+		LU632_RS09525	0.45	-1.8
1,803,481	+		LU632_RS09525	0.45	-0.6
1,803,481	+		LU632_RS09525	0.45	+1.1
1,803,482	-		LU632_RS09525	0.45	+0.3
1,803,482	-		LU632_RS09525	0.45	+1.8
1,803,482	-		LU632_RS09525	0.45	-1.2
1,803,483	+		LU632_RS09525	0.45	+2.3
1,803,484	-		LU632_RS09525	0.45	-0.2
1,803,484	-		LU632_RS09525	0.45	-1.0
1,803,485	-		LU632_RS09525	0.45	+0.5