Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09285

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,751,492	-		LU632_RS09270	0.81	+0.4
1,751,591	-		LU632_RS09270	0.85	+1.8
1,751,887	-				-4.1
1,751,989	+				-0.6
1,751,990	-				+0.5
1,752,034	-		LU632_RS09275	0.13	+2.4
1,752,123	+		LU632_RS09275	0.51	+0.8
1,752,158	-		LU632_RS09275	0.66	-0.2
1,752,227	+				+0.7
1,752,227	+				+0.2
1,752,227	+				+0.9
1,752,227	+				+0.1
1,752,228	-				+1.5
1,752,228	-				+0.9
1,752,228	-				+0.4
1,752,228	-				-0.2
1,752,228	-				+0.7
1,752,228	-				-0.2
1,752,228	-				+0.6
1,752,233	+				+1.1
1,752,234	-				+0.3
1,752,274	-		LU632_RS09280	0.21	+2.9
1,752,274	-		LU632_RS09280	0.21	-3.2
1,752,275	+		LU632_RS09280	0.21	-2.9
1,752,275	+		LU632_RS09280	0.21	+0.4
1,752,275	+		LU632_RS09280	0.21	+1.1
1,752,500	+				+2.1
1,752,542	-				-0.6
1,752,893	+		LU632_RS09285	0.45	+1.4
1,752,894	-		LU632_RS09285	0.45	+1.5
1,752,943	+		LU632_RS09285	0.50	+0.9
1,752,987	+		LU632_RS09285	0.55	+0.5
1,753,119	+		LU632_RS09285	0.69	+0.4
1,753,119	+		LU632_RS09285	0.69	-0.6
1,753,119	+		LU632_RS09285	0.69	-3.0
1,753,120	-		LU632_RS09285	0.69	+0.7
1,753,120	-		LU632_RS09285	0.69	+2.3
1,753,120	-		LU632_RS09285	0.69	+0.8
1,753,120	-		LU632_RS09285	0.69	+1.2
1,753,120	-		LU632_RS09285	0.69	-1.0
1,753,215	+		LU632_RS09285	0.79	-0.3
1,753,383	-				+1.8
1,753,383	-				+3.2
1,753,392	+				+1.6
1,753,393	-				+0.8
1,753,438	+				+3.4
1,753,564	-				+2.3
1,753,564	-				-0.8
1,753,629	+				+0.0
1,753,631	+				-1.5
1,753,632	-				-0.2
1,753,635	+				-0.2
1,753,641	+				-2.0
1,753,642	-				-1.5
1,753,642	-				+1.2
1,753,668	+				+0.2
1,753,722	+				-0.8
1,753,723	-				+0.3
1,753,723	-				-0.4
1,753,986	+		LU632_RS09290	0.14	-0.8
1,753,988	+		LU632_RS09290	0.15	+0.6
1,753,989	-		LU632_RS09290	0.15	-0.8
1,754,013	+		LU632_RS09290	0.15	-0.1
1,754,047	-		LU632_RS09290	0.16	+1.9
1,754,180	-		LU632_RS09290	0.19	+1.5
1,754,193	+		LU632_RS09290	0.20	-1.5
1,754,243	+		LU632_RS09290	0.21	-0.4
1,754,325	+		LU632_RS09290	0.23	-0.8
1,754,326	-		LU632_RS09290	0.23	+2.3
1,754,329	+		LU632_RS09290	0.23	-0.8