Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09245

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,744,126	-				-0.4
1,744,143	+				-0.2
1,744,143	+				+1.2
1,744,144	-				+1.2
1,744,144	-				+1.0
1,744,167	-				+1.8
1,744,183	-				-3.1
1,744,632	-				-0.3
1,744,743	+				-0.4
1,744,744	-				+1.7
1,744,755	+				+0.6
1,745,007	+				-3.1
1,745,008	-				+1.1
1,745,011	+				+0.3
1,745,012	-				-1.9
1,745,012	-				-1.4
1,745,012	-				+0.3
1,745,012	-				-1.2
1,745,018	+				+0.4
1,745,099	+				-0.5
1,745,099	+				+1.4
1,745,104	-				+0.1
1,745,470	-		LU632_RS09245	0.30	-2.2
1,745,649	+		LU632_RS09245	0.45	-0.3
1,745,649	+		LU632_RS09245	0.45	-0.2
1,745,649	+		LU632_RS09245	0.45	-3.0
1,745,650	-		LU632_RS09245	0.45	-0.8
1,745,745	+		LU632_RS09245	0.53	-2.2
1,745,748	-		LU632_RS09245	0.53	-0.8
1,745,748	-		LU632_RS09245	0.53	-1.5
1,745,792	+		LU632_RS09245	0.57	-0.3
1,745,792	+		LU632_RS09245	0.57	+1.3
1,745,792	+		LU632_RS09245	0.57	-1.5
1,745,793	-		LU632_RS09245	0.57	-1.3
1,745,793	-		LU632_RS09245	0.57	-1.2
1,745,793	-		LU632_RS09245	0.57	-3.3
1,745,871	+		LU632_RS09245	0.64	-1.2
1,746,054	+		LU632_RS09245	0.79	-2.0
1,746,055	-		LU632_RS09245	0.79	-2.0
1,746,252	-				-1.8
1,746,376	+				+0.8
1,746,378	+				-2.2
1,746,379	-				-0.3
1,746,379	-				+0.1
1,746,379	-				-0.6
1,746,379	-				+5.1
1,746,379	-				-2.5
1,746,429	-				-1.2
1,746,474	+				-0.1
1,746,474	+				+0.5
1,746,637	-		LU632_RS09250	0.38	-2.5
1,746,641	+		LU632_RS09250	0.39	-0.9
1,746,641	+		LU632_RS09250	0.39	+1.3
1,746,642	-		LU632_RS09250	0.40	+0.1
1,746,642	-		LU632_RS09250	0.40	+1.5
1,746,642	-		LU632_RS09250	0.40	-0.1
1,746,642	-		LU632_RS09250	0.40	-0.8
1,746,642	-		LU632_RS09250	0.40	-1.2
1,746,775	+		LU632_RS09250	0.72	+2.4
1,746,776	-		LU632_RS09250	0.73	+0.7
1,746,776	-		LU632_RS09250	0.73	+1.6
1,746,777	+		LU632_RS09250	0.73	+0.4
1,747,006	+		LU632_RS09255	0.24	+0.6
1,747,006	+		LU632_RS09255	0.24	+0.7
1,747,006	+		LU632_RS09255	0.24	+3.0
1,747,007	-		LU632_RS09255	0.24	-3.1
1,747,063	-		LU632_RS09255	0.36	-1.4
1,747,063	-		LU632_RS09255	0.36	-2.0
1,747,064	+		LU632_RS09255	0.36	+2.3
1,747,064	+		LU632_RS09255	0.36	-0.3
1,747,064	+		LU632_RS09255	0.36	+0.4
1,747,064	+		LU632_RS09255	0.36	+0.1
1,747,064	+		LU632_RS09255	0.36	-1.8
1,747,064	+		LU632_RS09255	0.36	+1.8
1,747,065	-		LU632_RS09255	0.36	+0.4
1,747,065	-		LU632_RS09255	0.36	-0.3
1,747,065	-		LU632_RS09255	0.36	+0.8
1,747,065	-		LU632_RS09255	0.36	+0.6
1,747,065	-		LU632_RS09255	0.36	+0.1
1,747,066	+		LU632_RS09255	0.37	+0.2
1,747,066	+		LU632_RS09255	0.37	+1.8
1,747,067	-		LU632_RS09255	0.37	-0.1
1,747,173	+		LU632_RS09255	0.59	-2.0
1,747,288	-		LU632_RS09255	0.84	+0.8