Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09120

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,715,782	-		LU632_RS09115	0.64	+0.4
1,715,856	+		LU632_RS09115	0.67	-3.3
1,715,858	-		LU632_RS09115	0.67	+1.8
1,715,955	+		LU632_RS09115	0.71	+2.4
1,715,956	-		LU632_RS09115	0.71	+1.0
1,715,956	-		LU632_RS09115	0.71	+2.7
1,715,956	-		LU632_RS09115	0.71	+1.8
1,715,956	-		LU632_RS09115	0.71	+0.8
1,715,956	-		LU632_RS09115	0.71	-0.8
1,715,956	-		LU632_RS09115	0.71	+0.4
1,716,003	+		LU632_RS09115	0.73	-1.2
1,716,003	+		LU632_RS09115	0.73	+0.0
1,716,004	-		LU632_RS09115	0.73	+0.2
1,716,004	-		LU632_RS09115	0.73	-0.8
1,716,015	+		LU632_RS09115	0.73	+0.3
1,716,016	-		LU632_RS09115	0.73	+0.8
1,716,078	+		LU632_RS09115	0.76	-1.6
1,716,197	+		LU632_RS09115	0.80	-3.3
1,716,197	+		LU632_RS09115	0.80	-0.8
1,716,198	-		LU632_RS09115	0.80	+1.0
1,716,309	-		LU632_RS09115	0.85	-1.4
1,716,412	-		LU632_RS09115	0.89	+1.2
1,716,550	+				-1.2
1,716,550	+				-0.2
1,716,550	+				+1.0
1,716,550	+				+1.1
1,716,550	+				-2.2
1,716,550	+				+1.3
1,716,551	-				-0.3
1,716,551	-				-0.7
1,716,551	-				-2.5
1,716,551	-				+1.2
1,716,552	+				+0.6
1,716,552	+				+2.4
1,716,552	+				-0.3
1,716,552	+				+1.6
1,716,552	+				+0.5
1,716,552	+				-0.1
1,716,552	+				-0.2
1,716,553	-				+0.4
1,716,554	+				-0.5
1,716,554	+				+1.1
1,716,554	+				+0.2
1,716,554	+				+1.8
1,716,555	-				-2.8
1,716,555	-				+0.6
1,716,615	-				-1.5
1,716,681	+				+0.5
1,716,707	+				+1.8
1,716,721	-				+0.1
1,716,731	+				-0.0
1,716,733	+				+2.4
1,716,733	+				-1.2
1,716,733	+				-1.1
1,716,733	+				+1.0
1,716,734	+				-1.0
1,716,734	-				-0.5
1,716,734	-				+0.2
1,716,738	+				-0.8
1,716,738	+				-1.2
1,716,738	+				-0.2
1,716,739	-				+1.1
1,716,739	-				+0.4
1,716,739	-				-0.9
1,716,739	-				-0.3
1,716,935	-		LU632_RS09120	0.21	+1.7
1,717,014	+		LU632_RS09120	0.29	-0.4
1,717,021	+		LU632_RS09120	0.29	-2.3
1,717,021	+		LU632_RS09120	0.29	-2.0
1,717,023	+		LU632_RS09120	0.30	+1.1
1,717,024	-		LU632_RS09120	0.30	-0.8
1,717,024	-		LU632_RS09120	0.30	+3.8
1,717,039	+		LU632_RS09120	0.31	+0.5
1,717,081	+		LU632_RS09120	0.35	-2.2
1,717,081	+		LU632_RS09120	0.35	+0.8
1,717,081	+		LU632_RS09120	0.35	-2.0
1,717,082	-		LU632_RS09120	0.35	-2.3
1,717,082	-		LU632_RS09120	0.35	+0.9
1,717,135	+		LU632_RS09120	0.40	+1.0
1,717,135	+		LU632_RS09120	0.40	-0.8
1,717,135	+		LU632_RS09120	0.40	-0.8
1,717,136	-		LU632_RS09120	0.40	+0.1
1,717,138	+		LU632_RS09120	0.41	-1.5
1,717,138	+		LU632_RS09120	0.41	-0.8
1,717,138	+		LU632_RS09120	0.41	-3.8
1,717,139	-		LU632_RS09120	0.41	+2.5
1,717,139	-		LU632_RS09120	0.41	-2.2
1,717,143	+		LU632_RS09120	0.41	-1.2
1,717,143	+		LU632_RS09120	0.41	-1.5
1,717,143	+		LU632_RS09120	0.41	-1.2
1,717,144	-		LU632_RS09120	0.41	-0.6
1,717,144	-		LU632_RS09120	0.41	+0.8
1,717,181	+		LU632_RS09120	0.45	+0.2
1,717,181	+		LU632_RS09120	0.45	+0.5
1,717,184	+		LU632_RS09120	0.45	+0.3
1,717,184	+		LU632_RS09120	0.45	-0.2
1,717,184	+		LU632_RS09120	0.45	+3.4
1,717,184	+		LU632_RS09120	0.45	+1.8
1,717,185	-		LU632_RS09120	0.45	+0.3
1,717,185	-		LU632_RS09120	0.45	-0.5
1,717,185	-		LU632_RS09120	0.45	-1.2
1,717,185	-		LU632_RS09120	0.45	-2.2
1,717,185	-		LU632_RS09120	0.45	+0.4
1,717,277	-		LU632_RS09120	0.54	+0.2
1,717,277	-		LU632_RS09120	0.54	+0.2
1,717,308	+		LU632_RS09120	0.57	-2.0
1,717,308	+		LU632_RS09120	0.57	-0.8
1,717,467	-		LU632_RS09120	0.72	+0.6
1,717,510	+		LU632_RS09120	0.76	+1.3
1,717,510	+		LU632_RS09120	0.76	+0.1
1,717,511	-		LU632_RS09120	0.76	+1.9
1,717,511	-		LU632_RS09120	0.76	+0.5
1,717,511	-		LU632_RS09120	0.76	-0.1
1,717,512	+		LU632_RS09120	0.76	-1.2
1,717,512	+		LU632_RS09120	0.76	-0.6
1,717,513	-		LU632_RS09120	0.76	+1.2
1,717,726	-				+3.3
1,717,738	-				+0.8
1,717,753	+				+4.3