Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09010

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,698,175	+		LU632_RS09005	0.63	-0.4
1,698,314	+		LU632_RS09005	0.76	+0.6
1,698,314	+		LU632_RS09005	0.76	-0.2
1,698,315	-		LU632_RS09005	0.77	+0.6
1,698,383	+		LU632_RS09005	0.83	-2.0
1,698,384	-		LU632_RS09005	0.83	-0.8
1,698,500	-				-0.5
1,698,500	-				+0.6
1,698,544	+				-0.8
1,698,544	+				-0.8
1,698,549	-				+0.1
1,698,603	-				-3.0
1,699,000	+				-1.6
1,699,001	-				-1.2
1,699,069	+		LU632_RS09010	0.17	+0.6
1,699,197	-		LU632_RS09010	0.42	-2.5
1,699,382	+		LU632_RS09010	0.78	-2.3
1,699,383	-		LU632_RS09010	0.78	+2.5
1,699,436	+		LU632_RS09010	0.88	+4.7
1,699,493	+				-0.6
1,699,732	-		LU632_RS09015	0.19	-1.2
1,699,760	-		LU632_RS09015	0.24	-0.2
1,699,890	+		LU632_RS09015	0.48	-0.6
1,699,890	+		LU632_RS09015	0.48	+1.3
1,699,892	+		LU632_RS09015	0.49	+0.8
1,699,892	+		LU632_RS09015	0.49	+1.3
1,699,892	+		LU632_RS09015	0.49	-0.2
1,699,893	-		LU632_RS09015	0.49	+1.4
1,699,893	-		LU632_RS09015	0.49	-0.5
1,699,893	-		LU632_RS09015	0.49	+0.5
1,700,000	+		LU632_RS09015	0.69	+2.1
1,700,089	+		LU632_RS09015	0.85	+0.9
1,700,188	-				-4.1
1,700,424	+				-0.8
1,700,424	+				-1.2