Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08855

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,671,402	+	rfbB	LU632_RS08850	0.21	-1.7
1,671,402	+	rfbB	LU632_RS08850	0.21	+0.3
1,671,650	-	rfbB	LU632_RS08850	0.44	-1.1
1,671,724	-	rfbB	LU632_RS08850	0.51	-1.1
1,671,805	-	rfbB	LU632_RS08850	0.58	-1.1
1,671,898	+	rfbB	LU632_RS08850	0.67	-0.1
1,672,042	-	rfbB	LU632_RS08850	0.80	-0.7
1,672,049	+	rfbB	LU632_RS08850	0.81	-3.1
1,672,050	-	rfbB	LU632_RS08850	0.81	-2.9
1,672,148	+				-1.4
1,672,214	-				-0.4
1,672,493	+	rfbD	LU632_RS08855	0.27	-2.9
1,672,497	-	rfbD	LU632_RS08855	0.27	-3.3
1,672,497	-	rfbD	LU632_RS08855	0.27	-0.8
1,672,569	+	rfbD	LU632_RS08855	0.35	-1.4
1,672,570	-	rfbD	LU632_RS08855	0.36	+0.9
1,672,676	+	rfbD	LU632_RS08855	0.48	+2.7
1,672,683	-	rfbD	LU632_RS08855	0.48	-0.6
1,672,716	+	rfbD	LU632_RS08855	0.52	+0.5
1,672,716	+	rfbD	LU632_RS08855	0.52	+1.7
1,672,787	+	rfbD	LU632_RS08855	0.60	+0.1
1,672,790	-	rfbD	LU632_RS08855	0.60	-1.1
1,672,790	-	rfbD	LU632_RS08855	0.60	-1.1
1,672,939	-	rfbD	LU632_RS08855	0.77	+0.9
1,672,943	+	rfbD	LU632_RS08855	0.78	+1.4
1,672,946	+	rfbD	LU632_RS08855	0.78	+0.9
1,672,947	-	rfbD	LU632_RS08855	0.78	-2.6
1,673,055	-				-1.4
1,673,055	-				-2.6
1,673,055	-				-0.8
1,673,057	+				+1.5
1,673,058	-				-2.2
1,673,058	-				+0.7
1,673,132	-				+0.3
1,673,139	+				+0.9
1,673,156	+				+0.0
1,673,160	+				+3.2
1,673,161	-				+0.1
1,673,161	-				-0.3
1,673,180	+				-0.9
1,673,189	-				-3.5
1,673,206	+				-1.4
1,673,206	+				-0.6
1,673,206	+				+0.7
1,673,274	+				-0.1
1,673,275	-				-1.0
1,673,278	+	rfbA	LU632_RS08860	0.10	-0.7
1,673,300	+	rfbA	LU632_RS08860	0.13	-2.1
1,673,342	-	rfbA	LU632_RS08860	0.17	-1.9
1,673,415	+	rfbA	LU632_RS08860	0.26	-0.4
1,673,415	+	rfbA	LU632_RS08860	0.26	-2.2
1,673,416	-	rfbA	LU632_RS08860	0.26	-0.2
1,673,419	+	rfbA	LU632_RS08860	0.26	-1.1
1,673,419	-	rfbA	LU632_RS08860	0.26	+1.2
1,673,428	+	rfbA	LU632_RS08860	0.27	-0.4
1,673,429	-	rfbA	LU632_RS08860	0.27	-0.9
1,673,524	+	rfbA	LU632_RS08860	0.38	-0.4
1,673,525	-	rfbA	LU632_RS08860	0.38	-0.7
1,673,558	+	rfbA	LU632_RS08860	0.42	-2.1
1,673,695	+	rfbA	LU632_RS08860	0.57	-2.0
1,673,695	+	rfbA	LU632_RS08860	0.57	+0.1
1,673,696	-	rfbA	LU632_RS08860	0.57	-1.7
1,673,699	+	rfbA	LU632_RS08860	0.58	-0.1
1,673,699	+	rfbA	LU632_RS08860	0.58	+1.5
1,673,700	-	rfbA	LU632_RS08860	0.58	+0.0
1,673,700	-	rfbA	LU632_RS08860	0.58	-1.9
1,673,803	+	rfbA	LU632_RS08860	0.70	-1.8
1,673,807	+	rfbA	LU632_RS08860	0.70	-0.6
1,673,808	-	rfbA	LU632_RS08860	0.70	-3.3
1,673,808	-	rfbA	LU632_RS08860	0.70	-1.1
1,673,808	-	rfbA	LU632_RS08860	0.70	-1.1
1,673,899	+	rfbA	LU632_RS08860	0.80	+0.9
1,673,916	+	rfbA	LU632_RS08860	0.82	-1.9
1,673,916	+	rfbA	LU632_RS08860	0.82	-0.2
1,673,916	+	rfbA	LU632_RS08860	0.82	+0.6
1,673,977	+	rfbA	LU632_RS08860	0.89	-1.4