Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08585 and thiD are separated by 106 nucleotides thiD and LU632_RS08595 are separated by 41 nucleotides LU632_RS08595 and LU632_RS08600 are separated by 3 nucleotides LU632_RS08600 and LU632_RS08605 are separated by 125 nucleotides LU632_RS08605 and LU632_RS08610 are separated by 165 nucleotides
LU632_RS08585: LU632_RS08585 - hydroxyethylthiazole kinase, at 1,612,744 to 1,613,361
_RS08585
LU632_RS08590: thiD - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 1,613,468 to 1,614,268
thiD
LU632_RS08595: LU632_RS08595 - hypothetical protein, at 1,614,310 to 1,614,471
_RS08595
LU632_RS08600: LU632_RS08600 - hypothetical protein, at 1,614,475 to 1,614,687
_RS08600
LU632_RS08605: LU632_RS08605 - hypothetical protein, at 1,614,813 to 1,614,959
_RS08605
LU632_RS08610: LU632_RS08610 - Ig-like domain-containing protein, at 1,615,125 to 1,615,796
_RS08610
Position (kb) 1614
1615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1613.357 kb on + strand at 1613.372 kb on + strand at 1613.372 kb on + strand at 1613.372 kb on + strand at 1613.418 kb on - strand at 1613.418 kb on - strand at 1613.480 kb on - strand at 1614.076 kb on - strand, within thiD at 1614.165 kb on + strand, within thiD at 1614.166 kb on - strand, within thiD at 1614.166 kb on - strand, within thiD at 1614.681 kb on + strand at 1614.682 kb on - strand at 1614.797 kb on + strand at 1614.797 kb on + strand at 1614.797 kb on + strand at 1614.798 kb on - strand at 1614.798 kb on - strand at 1614.863 kb on + strand, within LU632_RS08605 at 1614.864 kb on - strand, within LU632_RS08605 at 1614.898 kb on + strand, within LU632_RS08605 at 1614.898 kb on + strand, within LU632_RS08605 at 1614.943 kb on - strand, within LU632_RS08605 at 1615.024 kb on - strand at 1615.024 kb on - strand at 1615.033 kb on - strand at 1615.072 kb on + strand at 1615.185 kb on - strand at 1615.249 kb on + strand, within LU632_RS08610 at 1615.250 kb on - strand, within LU632_RS08610 at 1615.250 kb on - strand, within LU632_RS08610 at 1615.250 kb on - strand, within LU632_RS08610 at 1615.250 kb on - strand, within LU632_RS08610 at 1615.298 kb on + strand, within LU632_RS08610 at 1615.299 kb on - strand, within LU632_RS08610 at 1615.299 kb on - strand, within LU632_RS08610 at 1615.299 kb on - strand, within LU632_RS08610 at 1615.341 kb on + strand, within LU632_RS08610 at 1615.342 kb on - strand, within LU632_RS08610 at 1615.349 kb on + strand, within LU632_RS08610 at 1615.385 kb on + strand, within LU632_RS08610 at 1615.397 kb on + strand, within LU632_RS08610 at 1615.398 kb on - strand, within LU632_RS08610 at 1615.398 kb on - strand, within LU632_RS08610 at 1615.399 kb on - strand, within LU632_RS08610 at 1615.402 kb on + strand, within LU632_RS08610 at 1615.403 kb on - strand, within LU632_RS08610 at 1615.462 kb on + strand, within LU632_RS08610
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 1,613,357 + +0.9 1,613,372 + +1.9 1,613,372 + +0.0 1,613,372 + +3.3 1,613,418 - -2.5 1,613,418 - -2.2 1,613,480 - -1.2 1,614,076 - thiD LU632_RS08590 0.76 +2.9 1,614,165 + thiD LU632_RS08590 0.87 +1.0 1,614,166 - thiD LU632_RS08590 0.87 +0.3 1,614,166 - thiD LU632_RS08590 0.87 -1.0 1,614,681 + +2.7 1,614,682 - +0.8 1,614,797 + -0.4 1,614,797 + +1.4 1,614,797 + +0.2 1,614,798 - -0.0 1,614,798 - +1.5 1,614,863 + LU632_RS08605 0.34 +1.0 1,614,864 - LU632_RS08605 0.35 -1.0 1,614,898 + LU632_RS08605 0.58 -0.2 1,614,898 + LU632_RS08605 0.58 -0.0 1,614,943 - LU632_RS08605 0.88 +2.4 1,615,024 - +1.0 1,615,024 - +2.0 1,615,033 - -1.6 1,615,072 + -0.1 1,615,185 - -0.3 1,615,249 + LU632_RS08610 0.18 +0.5 1,615,250 - LU632_RS08610 0.19 +0.7 1,615,250 - LU632_RS08610 0.19 -1.6 1,615,250 - LU632_RS08610 0.19 +0.0 1,615,250 - LU632_RS08610 0.19 +1.2 1,615,298 + LU632_RS08610 0.26 +0.6 1,615,299 - LU632_RS08610 0.26 -1.0 1,615,299 - LU632_RS08610 0.26 +1.1 1,615,299 - LU632_RS08610 0.26 -1.9 1,615,341 + LU632_RS08610 0.32 -0.3 1,615,342 - LU632_RS08610 0.32 -2.3 1,615,349 + LU632_RS08610 0.33 +1.0 1,615,385 + LU632_RS08610 0.39 -3.1 1,615,397 + LU632_RS08610 0.40 -1.0 1,615,398 - LU632_RS08610 0.41 +0.0 1,615,398 - LU632_RS08610 0.41 -0.6 1,615,399 - LU632_RS08610 0.41 +1.1 1,615,402 + LU632_RS08610 0.41 +0.2 1,615,403 - LU632_RS08610 0.41 -0.5 1,615,462 + LU632_RS08610 0.50 +1.3
Or see this region's nucleotide sequence