Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08485

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,591,448	+				+0.6
1,591,449	-				-0.5
1,592,382	-		LU632_RS08485	0.55	+1.4
1,592,383	+		LU632_RS08485	0.55	-0.2
1,592,423	-		LU632_RS08485	0.70	+3.3
1,592,573	-				-0.8
1,592,573	-				+0.3
1,592,573	-				+0.2
1,592,573	-				+1.5
1,592,722	-				-0.8
1,592,775	+				+1.1
1,592,857	-				+1.5
1,592,860	-				+1.1
1,592,919	+				-2.5
1,592,920	-				-1.6
1,592,920	-				+1.0
1,592,927	+				+0.2
1,592,975	+				-0.0
1,593,040	+		LU632_RS08490	0.12	+1.3
1,593,041	-		LU632_RS08490	0.13	+0.9
1,593,043	-		LU632_RS08490	0.13	+0.7
1,593,171	+		LU632_RS08490	0.25	+0.4
1,593,172	-		LU632_RS08490	0.26	-0.3
1,593,172	-		LU632_RS08490	0.26	+1.2
1,593,225	+		LU632_RS08490	0.31	+1.0
1,593,225	+		LU632_RS08490	0.31	+2.8
1,593,225	+		LU632_RS08490	0.31	-2.4
1,593,225	+		LU632_RS08490	0.31	-0.8
1,593,225	+		LU632_RS08490	0.31	+0.9
1,593,226	-		LU632_RS08490	0.31	-0.8
1,593,276	-		LU632_RS08490	0.36	-0.4
1,593,276	-		LU632_RS08490	0.36	-0.3
1,593,278	+		LU632_RS08490	0.36	+0.8
1,593,279	-		LU632_RS08490	0.36	-1.8
1,593,279	-		LU632_RS08490	0.36	+0.2
1,593,331	-		LU632_RS08490	0.41	-0.0
1,593,484	-		LU632_RS08490	0.56	+0.8
1,593,490	-		LU632_RS08490	0.57	+0.5
1,593,490	-		LU632_RS08490	0.57	-0.3