Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08450

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,583,477	-		LU632_RS08445	0.32	-1.3
1,583,477	-		LU632_RS08445	0.32	-0.8
1,583,786	+		LU632_RS08445	0.58	-2.3
1,583,887	-		LU632_RS08445	0.67	+1.3
1,583,938	+		LU632_RS08445	0.71	+0.8
1,583,938	+		LU632_RS08445	0.71	-0.2
1,583,939	-		LU632_RS08445	0.71	+1.1
1,583,983	+		LU632_RS08445	0.75	-1.6
1,583,983	+		LU632_RS08445	0.75	-1.4
1,583,983	+		LU632_RS08445	0.75	+0.4
1,583,984	-		LU632_RS08445	0.75	-1.0
1,583,984	-		LU632_RS08445	0.75	+0.7
1,583,984	-		LU632_RS08445	0.75	+0.2
1,584,046	+		LU632_RS08445	0.80	-1.1
1,584,046	+		LU632_RS08445	0.80	-0.6
1,584,046	+		LU632_RS08445	0.80	-1.8
1,584,046	+		LU632_RS08445	0.80	+1.2
1,584,046	+		LU632_RS08445	0.80	+0.1
1,584,047	-		LU632_RS08445	0.80	-0.9
1,584,047	-		LU632_RS08445	0.80	-2.4
1,584,047	-		LU632_RS08445	0.80	+0.4
1,584,047	-		LU632_RS08445	0.80	-0.6
1,584,047	-		LU632_RS08445	0.80	+2.3
1,584,047	-		LU632_RS08445	0.80	-0.3
1,584,047	-		LU632_RS08445	0.80	-1.5
1,584,047	-		LU632_RS08445	0.80	-0.8
1,584,047	-		LU632_RS08445	0.80	+1.8
1,584,047	-		LU632_RS08445	0.80	+0.3
1,584,079	+		LU632_RS08445	0.83	+0.9
1,584,092	-		LU632_RS08445	0.84	-1.2
1,584,110	-		LU632_RS08445	0.86	+0.3
1,584,360	-				+2.0
1,584,365	-				-1.0
1,584,420	+				-0.0
1,584,598	-		LU632_RS08450	0.70	+0.7
1,584,599	+		LU632_RS08450	0.71	+1.5
1,584,600	-		LU632_RS08450	0.71	+0.8
1,584,600	-		LU632_RS08450	0.71	+3.0
1,584,600	-		LU632_RS08450	0.71	+2.2
1,584,668	+				-1.6
1,584,669	-				+0.2
1,584,766	-				-0.0
1,584,768	-				+0.4
1,584,768	-				+1.3
1,584,774	+				-0.3
1,584,832	+				+2.0
1,584,834	+				+3.0
1,584,834	+				+0.5
1,584,834	+				+2.3
1,584,834	+				-0.1
1,584,834	+				-2.5
1,584,835	-				+0.7
1,584,835	-				-0.1
1,584,835	-				+0.5
1,584,835	-				-0.9
1,584,835	-				-0.0
1,584,853	+				+0.6
1,584,906	+				+1.4
1,584,906	+				+0.2
1,584,920	+				+1.7
1,584,920	+				-0.3
1,584,921	-				-0.9
1,584,921	-				+1.4
1,584,955	+				+0.3
1,584,955	+				-0.6
1,584,956	-				-0.3
1,584,961	-				-0.7
1,584,974	-				-0.0
1,585,087	+				-2.0
1,585,251	+				+2.1
1,585,433	+		LU632_RS08455	0.66	+1.3
1,585,454	+		LU632_RS08455	0.73	+0.2
1,585,454	+		LU632_RS08455	0.73	+1.0
1,585,455	-		LU632_RS08455	0.73	+1.2
1,585,455	-		LU632_RS08455	0.73	-0.6
1,585,538	+				+0.8
1,585,542	-				+1.7