Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08425

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,579,395	+		LU632_RS08420	0.61	+3.1
1,579,536	-		LU632_RS08420	0.76	+2.2
1,579,541	-		LU632_RS08420	0.77	-2.4
1,579,597	-		LU632_RS08420	0.83	+1.3
1,579,668	-				-0.1
1,579,764	+				-1.1
1,579,764	+				+0.9
1,579,764	+				-0.9
1,579,764	+				+0.9
1,579,766	+				-0.1
1,579,766	+				-1.1
1,579,766	+				+2.3
1,579,767	-				+0.1
1,579,767	-				+2.9
1,579,767	-				+1.1
1,579,767	-				-0.1
1,579,768	+				-0.1
1,579,796	+				+0.9
1,579,820	-				-0.1
1,579,831	-				-2.4
1,579,925	-				+0.8
1,579,959	-				-0.1
1,579,961	-				+3.3
1,579,970	+				-1.1
1,579,994	+				+0.3
1,579,995	-				+0.8
1,579,995	-				-2.5
1,580,024	+				-0.1
1,580,106	+				-1.2
1,580,107	-				-0.4
1,580,107	-				-1.4
1,580,107	-				+0.2
1,580,107	-				-0.4
1,580,108	+				-0.9
1,580,108	+				-1.1
1,580,108	+				+0.3
1,580,109	-				+0.7
1,580,109	-				-0.1
1,580,109	-				-0.3
1,580,111	-				+0.6
1,580,111	-				-1.4
1,580,255	+				-0.9
1,580,276	-				+0.2
1,580,375	+				-2.2
1,580,375	+				+1.1
1,580,375	+				+1.5
1,580,375	+				-1.1
1,580,513	+		LU632_RS08425	0.39	+2.5
1,580,513	+		LU632_RS08425	0.39	+2.3
1,580,513	+		LU632_RS08425	0.39	+2.1
1,580,513	+		LU632_RS08425	0.39	+2.7
1,580,513	+		LU632_RS08425	0.39	+0.9
1,580,513	+		LU632_RS08425	0.39	+0.9
1,580,546	-		LU632_RS08425	0.48	+3.1
1,580,836	+				+1.9
1,580,836	+				-2.6
1,580,840	+				+0.2
1,580,840	+				+0.4
1,580,840	+				-0.4
1,580,841	-				-2.1
1,581,024	+				+0.9
1,581,175	-		LU632_RS08430	0.29	-1.8
1,581,175	-		LU632_RS08430	0.29	+1.2
1,581,175	-		LU632_RS08430	0.29	-0.2
1,581,179	+		LU632_RS08430	0.31	+1.2
1,581,180	-		LU632_RS08430	0.31	+0.8
1,581,182	+		LU632_RS08430	0.32	-0.8
1,581,182	+		LU632_RS08430	0.32	-1.1
1,581,183	-		LU632_RS08430	0.33	+0.6
1,581,297	-		LU632_RS08430	0.78	-1.1
1,581,311	-		LU632_RS08430	0.84	+0.2
1,581,356	-				-0.2
1,581,440	-				-2.2
1,581,485	-				+0.4
1,581,486	+				+1.9
1,581,577	-				-0.3
1,581,677	+				+0.9
1,581,677	+				+0.6
1,581,687	-				+1.4
1,581,687	-				+0.4