Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt upp and LU632_RS08285 overlap by 1 nucleotides LU632_RS08285 and uraA are separated by 60 nucleotides uraA and hda are separated by 844 nucleotides
LU632_RS08280: upp - uracil phosphoribosyltransferase, at 1,557,477 to 1,558,103
upp
LU632_RS08285: LU632_RS08285 - hypothetical protein, at 1,558,103 to 1,558,258
_RS08285
LU632_RS08290: uraA - uracil permease, at 1,558,319 to 1,559,596
uraA
LU632_RS08295: hda - DnaA inactivator Hda, at 1,560,441 to 1,561,148
hda
Position (kb) 1558
1559
1560 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 1557.402 kb on - strand at 1557.406 kb on - strand at 1557.406 kb on - strand at 1557.406 kb on - strand at 1557.433 kb on + strand at 1557.434 kb on + strand at 1557.495 kb on - strand at 1557.515 kb on + strand at 1557.516 kb on - strand at 1557.761 kb on + strand, within upp at 1557.761 kb on + strand, within upp at 1557.762 kb on - strand, within upp at 1557.899 kb on + strand, within upp at 1558.012 kb on - strand, within upp at 1558.101 kb on + strand at 1558.107 kb on + strand at 1558.107 kb on + strand at 1558.108 kb on - strand at 1558.191 kb on - strand, within LU632_RS08285 at 1558.191 kb on - strand, within LU632_RS08285 at 1558.257 kb on - strand at 1558.257 kb on - strand at 1558.268 kb on - strand at 1558.303 kb on + strand at 1558.316 kb on - strand at 1558.392 kb on + strand at 1558.496 kb on - strand, within uraA at 1558.578 kb on - strand, within uraA at 1558.864 kb on + strand, within uraA at 1558.865 kb on - strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.897 kb on + strand, within uraA at 1558.898 kb on - strand, within uraA at 1558.898 kb on - strand, within uraA at 1558.898 kb on - strand, within uraA at 1558.898 kb on - strand, within uraA at 1558.898 kb on - strand, within uraA at 1558.898 kb on - strand, within uraA at 1558.898 kb on - strand, within uraA at 1558.974 kb on - strand, within uraA at 1559.073 kb on + strand, within uraA at 1559.074 kb on - strand, within uraA at 1559.142 kb on + strand, within uraA at 1559.180 kb on + strand, within uraA at 1559.181 kb on - strand, within uraA at 1559.220 kb on - strand, within uraA at 1559.294 kb on - strand, within uraA at 1559.343 kb on - strand, within uraA at 1559.440 kb on + strand, within uraA at 1559.463 kb on + strand, within uraA at 1559.463 kb on + strand, within uraA at 1559.463 kb on + strand, within uraA at 1559.463 kb on + strand, within uraA at 1559.464 kb on - strand, within uraA at 1559.464 kb on - strand, within uraA at 1559.464 kb on - strand, within uraA at 1559.464 kb on - strand, within uraA at 1559.464 kb on - strand, within uraA at 1559.464 kb on - strand, within uraA at 1559.464 kb on - strand, within uraA at 1559.467 kb on + strand, within uraA at 1559.467 kb on + strand, within uraA at 1559.467 kb on + strand, within uraA at 1559.467 kb on + strand, within uraA at 1559.468 kb on - strand, within uraA at 1559.468 kb on - strand, within uraA at 1559.468 kb on - strand, within uraA at 1559.468 kb on - strand, within uraA at 1559.468 kb on - strand, within uraA at 1559.511 kb on + strand at 1559.780 kb on + strand at 1560.311 kb on - strand at 1560.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 1,557,402 - -1.2 1,557,406 - -2.0 1,557,406 - -0.0 1,557,406 - +1.2 1,557,433 + -0.8 1,557,434 + +1.0 1,557,495 - -1.4 1,557,515 + -0.0 1,557,516 - +0.5 1,557,761 + upp LU632_RS08280 0.45 -1.4 1,557,761 + upp LU632_RS08280 0.45 +2.0 1,557,762 - upp LU632_RS08280 0.45 -1.0 1,557,899 + upp LU632_RS08280 0.67 -2.2 1,558,012 - upp LU632_RS08280 0.85 +0.2 1,558,101 + -1.3 1,558,107 + +1.4 1,558,107 + +0.9 1,558,108 - +0.0 1,558,191 - LU632_RS08285 0.56 +0.6 1,558,191 - LU632_RS08285 0.56 -1.6 1,558,257 - +0.9 1,558,257 - -1.1 1,558,268 - +0.9 1,558,303 + +0.4 1,558,316 - +1.7 1,558,392 + -2.5 1,558,496 - uraA LU632_RS08290 0.14 -3.5 1,558,578 - uraA LU632_RS08290 0.20 +1.0 1,558,864 + uraA LU632_RS08290 0.43 -0.6 1,558,865 - uraA LU632_RS08290 0.43 -0.1 1,558,897 + uraA LU632_RS08290 0.45 +0.9 1,558,897 + uraA LU632_RS08290 0.45 -0.9 1,558,897 + uraA LU632_RS08290 0.45 +1.6 1,558,897 + uraA LU632_RS08290 0.45 +1.5 1,558,897 + uraA LU632_RS08290 0.45 -0.9 1,558,897 + uraA LU632_RS08290 0.45 +0.7 1,558,897 + uraA LU632_RS08290 0.45 +11.3 1,558,897 + uraA LU632_RS08290 0.45 +1.0 1,558,897 + uraA LU632_RS08290 0.45 +0.4 1,558,897 + uraA LU632_RS08290 0.45 -0.1 1,558,897 + uraA LU632_RS08290 0.45 +0.6 1,558,897 + uraA LU632_RS08290 0.45 +0.4 1,558,898 - uraA LU632_RS08290 0.45 +1.6 1,558,898 - uraA LU632_RS08290 0.45 -1.4 1,558,898 - uraA LU632_RS08290 0.45 -0.5 1,558,898 - uraA LU632_RS08290 0.45 +0.8 1,558,898 - uraA LU632_RS08290 0.45 +2.3 1,558,898 - uraA LU632_RS08290 0.45 +2.6 1,558,898 - uraA LU632_RS08290 0.45 -1.6 1,558,974 - uraA LU632_RS08290 0.51 +0.4 1,559,073 + uraA LU632_RS08290 0.59 +0.9 1,559,074 - uraA LU632_RS08290 0.59 +1.1 1,559,142 + uraA LU632_RS08290 0.64 -0.1 1,559,180 + uraA LU632_RS08290 0.67 +0.5 1,559,181 - uraA LU632_RS08290 0.67 +1.2 1,559,220 - uraA LU632_RS08290 0.71 -2.2 1,559,294 - uraA LU632_RS08290 0.76 +4.1 1,559,343 - uraA LU632_RS08290 0.80 +1.4 1,559,440 + uraA LU632_RS08290 0.88 +0.9 1,559,463 + uraA LU632_RS08290 0.90 +0.5 1,559,463 + uraA LU632_RS08290 0.90 -1.6 1,559,463 + uraA LU632_RS08290 0.90 +1.8 1,559,463 + uraA LU632_RS08290 0.90 -1.1 1,559,464 - uraA LU632_RS08290 0.90 -2.4 1,559,464 - uraA LU632_RS08290 0.90 +0.5 1,559,464 - uraA LU632_RS08290 0.90 -1.1 1,559,464 - uraA LU632_RS08290 0.90 -1.9 1,559,464 - uraA LU632_RS08290 0.90 -0.6 1,559,464 - uraA LU632_RS08290 0.90 +0.9 1,559,464 - uraA LU632_RS08290 0.90 +1.5 1,559,467 + uraA LU632_RS08290 0.90 -3.6 1,559,467 + uraA LU632_RS08290 0.90 -0.8 1,559,467 + uraA LU632_RS08290 0.90 +0.5 1,559,467 + uraA LU632_RS08290 0.90 +0.4 1,559,468 - uraA LU632_RS08290 0.90 +0.9 1,559,468 - uraA LU632_RS08290 0.90 +0.1 1,559,468 - uraA LU632_RS08290 0.90 -1.4 1,559,468 - uraA LU632_RS08290 0.90 -1.1 1,559,468 - uraA LU632_RS08290 0.90 -0.6 1,559,511 + +2.5 1,559,780 + +1.2 1,560,311 - -0.3 1,560,406 + +0.9
Or see this region's nucleotide sequence