Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08205

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,544,913	+				+0.8
1,544,935	+				+0.5
1,544,935	+				-0.2
1,545,007	+				+0.5
1,545,008	-				-1.4
1,545,227	+		LU632_RS08200	0.35	+1.5
1,545,228	-		LU632_RS08200	0.35	+1.0
1,545,228	-		LU632_RS08200	0.35	+1.3
1,545,228	-		LU632_RS08200	0.35	+0.6
1,545,228	-		LU632_RS08200	0.35	+1.4
1,545,289	+		LU632_RS08200	0.43	-0.4
1,545,290	-		LU632_RS08200	0.43	+1.0
1,545,365	-		LU632_RS08200	0.53	-1.4
1,545,473	+		LU632_RS08200	0.66	-2.2
1,545,578	+		LU632_RS08200	0.80	+0.8
1,545,668	-				+0.7
1,545,789	+				+0.8
1,545,820	-				-2.5
1,545,852	-				+0.8
1,545,872	+				-0.2
1,545,888	+				-1.0
1,545,930	-				-0.0
1,546,063	+		LU632_RS08205	0.29	-2.8
1,546,063	+		LU632_RS08205	0.29	+0.5
1,546,064	-		LU632_RS08205	0.29	-1.8
1,546,064	-		LU632_RS08205	0.29	-1.6
1,546,077	+		LU632_RS08205	0.32	+0.6
1,546,077	+		LU632_RS08205	0.32	+0.2
1,546,077	+		LU632_RS08205	0.32	-2.0
1,546,081	+		LU632_RS08205	0.32	+1.4
1,546,111	+		LU632_RS08205	0.37	+0.0
1,546,111	+		LU632_RS08205	0.37	-2.1
1,546,112	-		LU632_RS08205	0.37	+0.5
1,546,234	+		LU632_RS08205	0.58	+0.7
1,546,236	+		LU632_RS08205	0.58	-1.0
1,546,236	+		LU632_RS08205	0.58	-0.0
1,546,237	-		LU632_RS08205	0.58	+1.4
1,546,237	-		LU632_RS08205	0.58	+0.9
1,546,247	+		LU632_RS08205	0.60	-0.8
1,546,293	-		LU632_RS08205	0.67	+0.6
1,546,293	-		LU632_RS08205	0.67	-1.0
1,546,347	+		LU632_RS08205	0.76	+1.0
1,546,347	+		LU632_RS08205	0.76	-0.2
1,546,385	-		LU632_RS08205	0.83	-0.4
1,546,542	+				-0.4
1,546,570	-				+2.1
1,546,585	-				+0.1
1,546,585	-				+4.1
1,546,587	+				+1.2
1,546,679	+				-0.2
1,546,730	-				+0.5
1,546,833	+				+2.1
1,546,833	+				-1.5
1,546,868	-		LU632_RS08210	0.26	-3.0
1,546,919	+		LU632_RS08210	0.53	-0.0
1,546,920	-		LU632_RS08210	0.53	+1.0
1,546,921	+		LU632_RS08210	0.54	-0.0
1,546,922	-		LU632_RS08210	0.54	-0.8
1,547,013	-				+1.4
1,547,013	-				-0.1
1,547,051	+				+2.0
1,547,051	+				+2.8
1,547,052	-				+1.0
1,547,052	-				-0.2
1,547,052	-				+1.0
1,547,086	-				-1.8
1,547,086	-				+1.0
1,547,096	+				+1.5
1,547,096	+				-0.6
1,547,097	-				+2.2
1,547,097	-				-0.9
1,547,206	-				+1.1
1,547,206	-				+3.0
1,547,206	-				+1.0