Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08180

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,536,415	-				+0.8
1,536,447	-				-1.7
1,536,463	+				+1.9
1,536,547	+				+1.5
1,536,552	-				+0.8
1,536,759	-				+0.4
1,537,445	-				-0.2
1,537,622	-				+6.1
1,537,622	-				-0.9
1,537,684	-	rcsD	LU632_RS08180	0.11	+0.8
1,537,750	-	rcsD	LU632_RS08180	0.13	+6.2
1,537,750	-	rcsD	LU632_RS08180	0.13	+5.4
1,537,886	+	rcsD	LU632_RS08180	0.18	+6.1
1,537,887	-	rcsD	LU632_RS08180	0.18	+4.5
1,538,070	-	rcsD	LU632_RS08180	0.25	+5.0
1,538,070	-	rcsD	LU632_RS08180	0.25	+4.4
1,538,070	-	rcsD	LU632_RS08180	0.25	+4.8
1,538,071	+	rcsD	LU632_RS08180	0.25	+5.6
1,538,072	-	rcsD	LU632_RS08180	0.25	-0.1
1,538,127	-	rcsD	LU632_RS08180	0.27	+4.8
1,538,256	+	rcsD	LU632_RS08180	0.32	-0.1
1,538,256	+	rcsD	LU632_RS08180	0.32	+4.8
1,538,256	+	rcsD	LU632_RS08180	0.32	+3.4
1,538,257	-	rcsD	LU632_RS08180	0.32	+3.4
1,538,257	-	rcsD	LU632_RS08180	0.32	+4.7
1,538,257	-	rcsD	LU632_RS08180	0.32	+4.9
1,538,257	-	rcsD	LU632_RS08180	0.32	+3.1
1,538,306	+	rcsD	LU632_RS08180	0.34	+5.3
1,538,307	-	rcsD	LU632_RS08180	0.34	+5.1
1,538,310	-	rcsD	LU632_RS08180	0.34	+3.7
1,538,341	+	rcsD	LU632_RS08180	0.35	+6.4
1,538,354	+	rcsD	LU632_RS08180	0.36	+3.9
1,538,366	+	rcsD	LU632_RS08180	0.36	+1.5
1,538,494	-	rcsD	LU632_RS08180	0.41	+5.5
1,538,494	-	rcsD	LU632_RS08180	0.41	+4.1
1,538,543	+	rcsD	LU632_RS08180	0.43	+3.6
1,538,544	-	rcsD	LU632_RS08180	0.43	+5.5
1,538,548	-	rcsD	LU632_RS08180	0.43	+5.0
1,538,548	-	rcsD	LU632_RS08180	0.43	+4.9
1,538,548	-	rcsD	LU632_RS08180	0.43	+4.1
1,538,550	+	rcsD	LU632_RS08180	0.43	+1.3
1,538,640	+	rcsD	LU632_RS08180	0.47	+6.9
1,538,640	+	rcsD	LU632_RS08180	0.47	+4.5
1,538,641	-	rcsD	LU632_RS08180	0.47	+5.2
1,538,641	-	rcsD	LU632_RS08180	0.47	+5.0
1,538,657	+	rcsD	LU632_RS08180	0.47	+7.8
1,538,767	-	rcsD	LU632_RS08180	0.51	+5.0
1,538,872	-	rcsD	LU632_RS08180	0.55	+3.7
1,538,960	+	rcsD	LU632_RS08180	0.59	+4.9
1,538,960	+	rcsD	LU632_RS08180	0.59	+5.0
1,538,961	-	rcsD	LU632_RS08180	0.59	+4.2
1,539,088	-	rcsD	LU632_RS08180	0.63	+2.2
1,539,132	-	rcsD	LU632_RS08180	0.65	+4.6
1,539,132	-	rcsD	LU632_RS08180	0.65	+3.2
1,539,135	+	rcsD	LU632_RS08180	0.65	+4.5
1,539,135	+	rcsD	LU632_RS08180	0.65	+5.4
1,539,135	+	rcsD	LU632_RS08180	0.65	+4.0
1,539,149	+	rcsD	LU632_RS08180	0.66	+3.0
1,539,149	+	rcsD	LU632_RS08180	0.66	+3.3
1,539,150	-	rcsD	LU632_RS08180	0.66	+4.2
1,539,150	-	rcsD	LU632_RS08180	0.66	+2.9
1,539,150	-	rcsD	LU632_RS08180	0.66	+1.1
1,539,164	+	rcsD	LU632_RS08180	0.66	+4.1
1,539,270	-	rcsD	LU632_RS08180	0.70	+5.1
1,539,318	-	rcsD	LU632_RS08180	0.72	+2.1
1,539,442	+	rcsD	LU632_RS08180	0.77	-0.4
1,539,443	-	rcsD	LU632_RS08180	0.77	+6.2
1,539,443	-	rcsD	LU632_RS08180	0.77	+4.3
1,539,461	+	rcsD	LU632_RS08180	0.77	+3.1
1,539,543	+	rcsD	LU632_RS08180	0.81	+2.9
1,539,545	+	rcsD	LU632_RS08180	0.81	+4.0
1,539,640	+	rcsD	LU632_RS08180	0.84	+4.8
1,539,641	-	rcsD	LU632_RS08180	0.84	+4.7
1,539,645	-	rcsD	LU632_RS08180	0.84	+1.3
1,539,653	+	rcsD	LU632_RS08180	0.85	-1.4
1,539,778	+	rcsD	LU632_RS08180	0.89	+4.4
1,539,877	+				+3.9
1,539,878	-				+5.1
1,540,063	+				-2.8
1,540,063	+				+5.0
1,540,069	-				+3.0
1,540,069	-				+3.0
1,540,120	+				+3.1
1,540,184	+				+2.4
1,540,191	-				-2.4
1,540,191	-				+1.8
1,540,193	-				+2.6
1,540,193	-				-0.6
1,540,218	-				+0.4
1,540,235	+				+2.3
1,540,235	+				+0.3
1,540,295	+				-0.3
1,540,305	-				-1.4
1,540,305	-				+1.0
1,540,305	-				+0.1
1,540,379	-				+0.8
1,540,384	-				-1.1
1,540,410	+				+2.3
1,540,672	+				-0.3
1,540,769	-				-2.4