Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gyrA and rcsC are separated by 199 nucleotides rcsC and rcsB are separated by 395 nucleotides
LU632_RS08165: gyrA - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 1,530,667 to 1,533,306
gyrA
LU632_RS08170: rcsC - two-component system sensor histidine kinase RcsC, at 1,533,506 to 1,536,361
rcsC
LU632_RS08175: rcsB - transcriptional regulator RcsB, at 1,536,757 to 1,537,407
rcsB
Position (kb) 1533
1534
1535
1536
1537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 1533.250 kb on - strand at 1533.250 kb on - strand at 1533.338 kb on - strand at 1533.338 kb on - strand at 1533.394 kb on - strand at 1533.460 kb on - strand at 1533.460 kb on - strand at 1533.469 kb on - strand at 1533.469 kb on - strand at 1533.512 kb on + strand at 1533.513 kb on - strand at 1533.513 kb on - strand at 1533.516 kb on + strand at 1533.517 kb on - strand at 1533.611 kb on + strand at 1533.616 kb on + strand at 1533.689 kb on + strand at 1533.689 kb on + strand at 1533.690 kb on - strand at 1533.690 kb on - strand at 1533.690 kb on - strand at 1533.690 kb on - strand at 1533.691 kb on + strand at 1533.692 kb on - strand at 1533.692 kb on - strand at 1533.692 kb on - strand at 1533.692 kb on - strand at 1533.748 kb on + strand at 1533.760 kb on + strand at 1533.802 kb on + strand, within rcsC at 1533.802 kb on + strand, within rcsC at 1533.828 kb on - strand, within rcsC at 1533.859 kb on + strand, within rcsC at 1533.860 kb on - strand, within rcsC at 1534.025 kb on - strand, within rcsC at 1534.043 kb on - strand, within rcsC at 1534.049 kb on - strand, within rcsC at 1534.088 kb on - strand, within rcsC at 1534.130 kb on + strand, within rcsC at 1534.133 kb on + strand, within rcsC at 1534.133 kb on + strand, within rcsC at 1534.134 kb on - strand, within rcsC at 1534.134 kb on - strand, within rcsC at 1534.134 kb on - strand, within rcsC at 1534.134 kb on - strand, within rcsC at 1534.134 kb on - strand, within rcsC at 1534.134 kb on - strand, within rcsC at 1534.135 kb on + strand, within rcsC at 1534.135 kb on + strand, within rcsC at 1534.135 kb on + strand, within rcsC at 1534.136 kb on - strand, within rcsC at 1534.136 kb on - strand, within rcsC at 1534.136 kb on - strand, within rcsC at 1534.136 kb on - strand, within rcsC at 1534.151 kb on + strand, within rcsC at 1534.151 kb on + strand, within rcsC at 1534.151 kb on + strand, within rcsC at 1534.152 kb on - strand, within rcsC at 1534.155 kb on + strand, within rcsC at 1534.155 kb on + strand, within rcsC at 1534.155 kb on + strand, within rcsC at 1534.155 kb on + strand, within rcsC at 1534.155 kb on + strand, within rcsC at 1534.155 kb on + strand, within rcsC at 1534.155 kb on + strand, within rcsC at 1534.156 kb on - strand, within rcsC at 1534.158 kb on + strand, within rcsC at 1534.213 kb on + strand, within rcsC at 1534.300 kb on + strand, within rcsC at 1534.344 kb on - strand, within rcsC at 1534.345 kb on + strand, within rcsC at 1534.358 kb on - strand, within rcsC at 1534.404 kb on + strand, within rcsC at 1534.409 kb on + strand, within rcsC at 1534.409 kb on + strand, within rcsC at 1534.410 kb on - strand, within rcsC at 1534.410 kb on - strand, within rcsC at 1534.410 kb on - strand, within rcsC at 1534.410 kb on - strand, within rcsC at 1534.430 kb on - strand, within rcsC at 1534.649 kb on - strand, within rcsC at 1534.649 kb on - strand, within rcsC at 1534.672 kb on + strand, within rcsC at 1534.672 kb on + strand, within rcsC at 1534.673 kb on - strand, within rcsC at 1534.673 kb on - strand, within rcsC at 1534.676 kb on + strand, within rcsC at 1534.677 kb on - strand, within rcsC at 1534.768 kb on + strand, within rcsC at 1534.768 kb on + strand, within rcsC at 1534.769 kb on - strand, within rcsC at 1535.044 kb on + strand, within rcsC at 1535.045 kb on - strand, within rcsC at 1535.080 kb on + strand, within rcsC at 1535.119 kb on + strand, within rcsC at 1535.175 kb on - strand, within rcsC at 1535.326 kb on + strand, within rcsC at 1535.326 kb on + strand, within rcsC at 1535.327 kb on - strand, within rcsC at 1535.339 kb on + strand, within rcsC at 1535.370 kb on + strand, within rcsC at 1535.455 kb on + strand, within rcsC at 1535.500 kb on + strand, within rcsC at 1535.506 kb on + strand, within rcsC at 1535.561 kb on - strand, within rcsC at 1535.561 kb on - strand, within rcsC at 1535.579 kb on + strand, within rcsC at 1535.579 kb on + strand, within rcsC at 1535.579 kb on + strand, within rcsC at 1535.579 kb on + strand, within rcsC at 1535.579 kb on + strand, within rcsC at 1535.579 kb on + strand, within rcsC at 1535.579 kb on + strand, within rcsC at 1535.580 kb on - strand, within rcsC at 1535.580 kb on - strand, within rcsC at 1535.580 kb on - strand, within rcsC at 1535.588 kb on + strand, within rcsC at 1535.589 kb on - strand, within rcsC at 1535.589 kb on - strand, within rcsC at 1535.590 kb on + strand, within rcsC at 1535.590 kb on + strand, within rcsC at 1535.656 kb on + strand, within rcsC at 1535.685 kb on + strand, within rcsC at 1535.686 kb on - strand, within rcsC at 1535.746 kb on + strand, within rcsC at 1535.746 kb on + strand, within rcsC at 1535.746 kb on + strand, within rcsC at 1535.747 kb on - strand, within rcsC at 1535.747 kb on - strand, within rcsC at 1535.749 kb on + strand, within rcsC at 1535.749 kb on + strand, within rcsC at 1535.749 kb on + strand, within rcsC at 1535.750 kb on - strand, within rcsC at 1535.858 kb on + strand, within rcsC at 1535.858 kb on + strand, within rcsC at 1535.859 kb on - strand, within rcsC at 1535.859 kb on - strand, within rcsC at 1535.924 kb on - strand, within rcsC at 1535.924 kb on - strand, within rcsC at 1535.934 kb on + strand, within rcsC at 1535.955 kb on + strand, within rcsC at 1536.014 kb on - strand, within rcsC at 1536.014 kb on - strand, within rcsC at 1536.015 kb on + strand, within rcsC at 1536.138 kb on + strand at 1536.138 kb on + strand at 1536.139 kb on - strand at 1536.139 kb on - strand at 1536.151 kb on + strand at 1536.151 kb on + strand at 1536.151 kb on + strand at 1536.152 kb on - strand at 1536.169 kb on + strand at 1536.170 kb on - strand at 1536.181 kb on - strand at 1536.195 kb on + strand at 1536.254 kb on - strand at 1536.271 kb on + strand at 1536.306 kb on + strand at 1536.306 kb on + strand at 1536.306 kb on + strand at 1536.307 kb on - strand at 1536.326 kb on + strand at 1536.370 kb on + strand at 1536.377 kb on - strand at 1536.377 kb on - strand at 1536.399 kb on + strand at 1536.400 kb on - strand at 1536.400 kb on - strand at 1536.403 kb on - strand at 1536.403 kb on - strand at 1536.415 kb on - strand at 1536.447 kb on - strand at 1536.463 kb on + strand at 1536.547 kb on + strand at 1536.552 kb on - strand at 1536.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 1,533,250 - -0.6 1,533,250 - -0.7 1,533,338 - +0.6 1,533,338 - +0.4 1,533,394 - +0.4 1,533,460 - +6.0 1,533,460 - +3.0 1,533,469 - +4.7 1,533,469 - +5.4 1,533,512 + +6.6 1,533,513 - +4.5 1,533,513 - -1.4 1,533,516 + +1.3 1,533,517 - +4.7 1,533,611 + +5.9 1,533,616 + +6.3 1,533,689 + +2.1 1,533,689 + +5.2 1,533,690 - +5.0 1,533,690 - +4.4 1,533,690 - +4.3 1,533,690 - +4.8 1,533,691 + -1.1 1,533,692 - +4.4 1,533,692 - +5.8 1,533,692 - +3.3 1,533,692 - +6.8 1,533,748 + -1.4 1,533,760 + +5.3 1,533,802 + rcsC LU632_RS08170 0.10 +5.4 1,533,802 + rcsC LU632_RS08170 0.10 +4.5 1,533,828 - rcsC LU632_RS08170 0.11 +6.0 1,533,859 + rcsC LU632_RS08170 0.12 +4.9 1,533,860 - rcsC LU632_RS08170 0.12 +4.5 1,534,025 - rcsC LU632_RS08170 0.18 +4.5 1,534,043 - rcsC LU632_RS08170 0.19 +3.8 1,534,049 - rcsC LU632_RS08170 0.19 +7.5 1,534,088 - rcsC LU632_RS08170 0.20 +3.9 1,534,130 + rcsC LU632_RS08170 0.22 +4.4 1,534,133 + rcsC LU632_RS08170 0.22 +5.7 1,534,133 + rcsC LU632_RS08170 0.22 +5.1 1,534,134 - rcsC LU632_RS08170 0.22 +2.7 1,534,134 - rcsC LU632_RS08170 0.22 +2.6 1,534,134 - rcsC LU632_RS08170 0.22 +5.2 1,534,134 - rcsC LU632_RS08170 0.22 +3.8 1,534,134 - rcsC LU632_RS08170 0.22 +5.4 1,534,134 - rcsC LU632_RS08170 0.22 +3.9 1,534,135 + rcsC LU632_RS08170 0.22 +4.1 1,534,135 + rcsC LU632_RS08170 0.22 +4.7 1,534,135 + rcsC LU632_RS08170 0.22 +5.7 1,534,136 - rcsC LU632_RS08170 0.22 +4.2 1,534,136 - rcsC LU632_RS08170 0.22 +5.7 1,534,136 - rcsC LU632_RS08170 0.22 +4.8 1,534,136 - rcsC LU632_RS08170 0.22 -1.4 1,534,151 + rcsC LU632_RS08170 0.23 +5.2 1,534,151 + rcsC LU632_RS08170 0.23 +3.6 1,534,151 + rcsC LU632_RS08170 0.23 +4.6 1,534,152 - rcsC LU632_RS08170 0.23 +5.7 1,534,155 + rcsC LU632_RS08170 0.23 +2.1 1,534,155 + rcsC LU632_RS08170 0.23 +5.4 1,534,155 + rcsC LU632_RS08170 0.23 +3.8 1,534,155 + rcsC LU632_RS08170 0.23 +0.7 1,534,155 + rcsC LU632_RS08170 0.23 +4.4 1,534,155 + rcsC LU632_RS08170 0.23 +5.4 1,534,155 + rcsC LU632_RS08170 0.23 +4.1 1,534,156 - rcsC LU632_RS08170 0.23 +4.2 1,534,158 + rcsC LU632_RS08170 0.23 +5.0 1,534,213 + rcsC LU632_RS08170 0.25 +4.1 1,534,300 + rcsC LU632_RS08170 0.28 -1.4 1,534,344 - rcsC LU632_RS08170 0.29 +5.1 1,534,345 + rcsC LU632_RS08170 0.29 +4.5 1,534,358 - rcsC LU632_RS08170 0.30 -1.4 1,534,404 + rcsC LU632_RS08170 0.31 +9.0 1,534,409 + rcsC LU632_RS08170 0.32 +3.8 1,534,409 + rcsC LU632_RS08170 0.32 +4.0 1,534,410 - rcsC LU632_RS08170 0.32 +5.9 1,534,410 - rcsC LU632_RS08170 0.32 +3.5 1,534,410 - rcsC LU632_RS08170 0.32 +4.5 1,534,410 - rcsC LU632_RS08170 0.32 +3.0 1,534,430 - rcsC LU632_RS08170 0.32 +5.0 1,534,649 - rcsC LU632_RS08170 0.40 +4.5 1,534,649 - rcsC LU632_RS08170 0.40 +4.9 1,534,672 + rcsC LU632_RS08170 0.41 +3.7 1,534,672 + rcsC LU632_RS08170 0.41 +5.4 1,534,673 - rcsC LU632_RS08170 0.41 +4.0 1,534,673 - rcsC LU632_RS08170 0.41 +5.5 1,534,676 + rcsC LU632_RS08170 0.41 +5.1 1,534,677 - rcsC LU632_RS08170 0.41 +4.6 1,534,768 + rcsC LU632_RS08170 0.44 +4.9 1,534,768 + rcsC LU632_RS08170 0.44 +0.9 1,534,769 - rcsC LU632_RS08170 0.44 +5.1 1,535,044 + rcsC LU632_RS08170 0.54 +5.6 1,535,045 - rcsC LU632_RS08170 0.54 +4.3 1,535,080 + rcsC LU632_RS08170 0.55 +5.8 1,535,119 + rcsC LU632_RS08170 0.56 +3.6 1,535,175 - rcsC LU632_RS08170 0.58 +4.0 1,535,326 + rcsC LU632_RS08170 0.64 +3.2 1,535,326 + rcsC LU632_RS08170 0.64 +4.1 1,535,327 - rcsC LU632_RS08170 0.64 +5.0 1,535,339 + rcsC LU632_RS08170 0.64 +5.7 1,535,370 + rcsC LU632_RS08170 0.65 +2.8 1,535,455 + rcsC LU632_RS08170 0.68 +5.1 1,535,500 + rcsC LU632_RS08170 0.70 +6.0 1,535,506 + rcsC LU632_RS08170 0.70 +4.1 1,535,561 - rcsC LU632_RS08170 0.72 +6.3 1,535,561 - rcsC LU632_RS08170 0.72 +4.8 1,535,579 + rcsC LU632_RS08170 0.73 +1.2 1,535,579 + rcsC LU632_RS08170 0.73 +0.8 1,535,579 + rcsC LU632_RS08170 0.73 +2.4 1,535,579 + rcsC LU632_RS08170 0.73 +4.2 1,535,579 + rcsC LU632_RS08170 0.73 +4.8 1,535,579 + rcsC LU632_RS08170 0.73 +4.8 1,535,579 + rcsC LU632_RS08170 0.73 +2.5 1,535,580 - rcsC LU632_RS08170 0.73 +4.7 1,535,580 - rcsC LU632_RS08170 0.73 +5.7 1,535,580 - rcsC LU632_RS08170 0.73 +5.2 1,535,588 + rcsC LU632_RS08170 0.73 +5.7 1,535,589 - rcsC LU632_RS08170 0.73 +5.2 1,535,589 - rcsC LU632_RS08170 0.73 +4.7 1,535,590 + rcsC LU632_RS08170 0.73 +3.7 1,535,590 + rcsC LU632_RS08170 0.73 +3.7 1,535,656 + rcsC LU632_RS08170 0.75 +4.0 1,535,685 + rcsC LU632_RS08170 0.76 +2.8 1,535,686 - rcsC LU632_RS08170 0.76 +3.7 1,535,746 + rcsC LU632_RS08170 0.78 -3.4 1,535,746 + rcsC LU632_RS08170 0.78 +5.7 1,535,746 + rcsC LU632_RS08170 0.78 +3.2 1,535,747 - rcsC LU632_RS08170 0.78 +4.1 1,535,747 - rcsC LU632_RS08170 0.78 +6.6 1,535,749 + rcsC LU632_RS08170 0.79 +3.4 1,535,749 + rcsC LU632_RS08170 0.79 +5.2 1,535,749 + rcsC LU632_RS08170 0.79 +4.8 1,535,750 - rcsC LU632_RS08170 0.79 -2.5 1,535,858 + rcsC LU632_RS08170 0.82 +0.5 1,535,858 + rcsC LU632_RS08170 0.82 +3.8 1,535,859 - rcsC LU632_RS08170 0.82 +4.5 1,535,859 - rcsC LU632_RS08170 0.82 +5.0 1,535,924 - rcsC LU632_RS08170 0.85 +5.0 1,535,924 - rcsC LU632_RS08170 0.85 +4.7 1,535,934 + rcsC LU632_RS08170 0.85 +3.9 1,535,955 + rcsC LU632_RS08170 0.86 +3.7 1,536,014 - rcsC LU632_RS08170 0.88 +3.9 1,536,014 - rcsC LU632_RS08170 0.88 -0.1 1,536,015 + rcsC LU632_RS08170 0.88 +0.9 1,536,138 + +4.7 1,536,138 + +5.2 1,536,139 - +5.1 1,536,139 - +4.5 1,536,151 + +4.8 1,536,151 + +1.4 1,536,151 + +3.5 1,536,152 - +0.3 1,536,169 + +5.2 1,536,170 - +4.6 1,536,181 - +4.6 1,536,195 + +3.3 1,536,254 - +4.2 1,536,271 + +1.9 1,536,306 + +1.8 1,536,306 + +0.6 1,536,306 + +3.2 1,536,307 - +1.1 1,536,326 + +3.0 1,536,370 + +0.6 1,536,377 - +0.9 1,536,377 - +1.8 1,536,399 + +1.5 1,536,400 - -1.3 1,536,400 - +2.9 1,536,403 - -2.2 1,536,403 - +0.9 1,536,415 - +0.8 1,536,447 - -1.7 1,536,463 + +1.9 1,536,547 + +1.5 1,536,552 - +0.8 1,536,759 - +0.4
Or see this region's nucleotide sequence