Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08035

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,506,252	-	nuoN	LU632_RS08025	0.87	-0.7
1,506,252	-	nuoN	LU632_RS08025	0.87	-3.7
1,506,392	+				-1.1
1,506,440	+				+1.0
1,506,441	-				+1.2
1,506,441	-				+1.9
1,506,503	+				+0.6
1,506,503	+				-1.7
1,506,568	-				+0.5
1,506,650	+				-2.2
1,506,650	+				-2.3
1,506,651	-				-2.1
1,507,049	-				+0.0
1,507,049	-				+0.9
1,507,229	+				-0.5
1,507,362	-		LU632_RS08035	0.12	-2.3
1,507,600	-		LU632_RS08035	0.26	-3.2
1,507,602	-		LU632_RS08035	0.26	-2.1
1,507,662	+		LU632_RS08035	0.30	-0.7
1,507,662	+		LU632_RS08035	0.30	-1.4
1,507,665	+		LU632_RS08035	0.30	+0.2
1,507,699	+		LU632_RS08035	0.32	+0.7
1,507,700	-		LU632_RS08035	0.32	-2.1
1,507,717	-		LU632_RS08035	0.33	-1.4
1,507,761	+		LU632_RS08035	0.36	-2.4
1,507,761	+		LU632_RS08035	0.36	-2.9
1,507,784	+		LU632_RS08035	0.37	-2.1
1,507,853	+		LU632_RS08035	0.41	-1.1
1,507,854	-		LU632_RS08035	0.42	+0.9
1,507,872	+		LU632_RS08035	0.43	-3.0
1,507,975	-		LU632_RS08035	0.49	-2.3
1,508,074	-		LU632_RS08035	0.55	-0.1
1,508,136	-		LU632_RS08035	0.59	+0.9
1,508,136	-		LU632_RS08035	0.59	+0.1
1,508,136	-		LU632_RS08035	0.59	+0.9
1,508,220	+		LU632_RS08035	0.64	-2.5
1,508,225	-		LU632_RS08035	0.64	-1.9
1,508,258	+		LU632_RS08035	0.66	-2.0
1,508,259	-		LU632_RS08035	0.66	-1.9
1,508,259	-		LU632_RS08035	0.66	-2.3
1,508,259	-		LU632_RS08035	0.66	-2.0
1,508,408	+		LU632_RS08035	0.75	-1.9
1,508,409	-		LU632_RS08035	0.75	-1.5
1,508,409	-		LU632_RS08035	0.75	-1.7
1,508,409	-		LU632_RS08035	0.75	-2.3
1,508,409	-		LU632_RS08035	0.75	-2.7
1,508,515	+		LU632_RS08035	0.81	-1.3
1,508,516	-		LU632_RS08035	0.82	-0.5
1,508,542	-		LU632_RS08035	0.83	-1.1
1,508,568	-		LU632_RS08035	0.85	-2.2
1,508,582	+		LU632_RS08035	0.86	-2.4
1,508,803	-				-2.1
1,508,856	-				+0.9
1,508,900	-				+1.4
1,508,940	-				-0.3
1,508,955	-				+2.8
1,508,961	-				-0.0
1,509,246	+		LU632_RS08040	0.85	-2.1
1,509,246	+		LU632_RS08040	0.85	+1.2
1,509,299	+		LU632_RS08045	0.16	+0.2
1,509,402	-		LU632_RS08045	0.49	-0.7
1,509,402	-		LU632_RS08045	0.49	-0.9
1,509,594	-				+2.2
1,509,598	+				-3.3
1,509,598	+				-0.2
1,509,604	-				+0.3
1,509,696	+				+0.3
1,509,706	-				+1.9
1,509,750	+				-0.3
1,509,751	-				+0.4
1,509,756	-				-2.9
1,509,769	-				-3.3
1,509,788	+				-0.9
1,509,808	-				+1.9