Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08020

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,502,505	+	nuoL	LU632_RS08015	0.60	-1.0
1,502,506	-	nuoL	LU632_RS08015	0.60	-1.7
1,502,524	+	nuoL	LU632_RS08015	0.61	-3.0
1,502,525	-	nuoL	LU632_RS08015	0.61	-0.7
1,502,667	+	nuoL	LU632_RS08015	0.69	-0.5
1,502,668	-	nuoL	LU632_RS08015	0.69	-3.0
1,502,680	+	nuoL	LU632_RS08015	0.70	-1.1
1,502,680	+	nuoL	LU632_RS08015	0.70	-2.4
1,502,681	-	nuoL	LU632_RS08015	0.70	-0.1
1,502,682	+	nuoL	LU632_RS08015	0.70	-1.4
1,502,683	-	nuoL	LU632_RS08015	0.70	-3.8
1,502,752	-	nuoL	LU632_RS08015	0.74	-1.9
1,502,777	+	nuoL	LU632_RS08015	0.75	+1.5
1,502,778	-	nuoL	LU632_RS08015	0.75	-1.7
1,503,229	+				+1.3
1,503,294	+				-1.7
1,503,305	+				+0.1
1,503,305	+				-2.0
1,503,359	+				-2.7
1,503,365	-				-2.3
1,503,365	-				+0.9
1,503,365	-				-0.1
1,503,372	+				-1.9
1,503,373	-				-1.1
1,503,373	-				-3.7
1,503,476	-				+0.9
1,503,477	+				-2.5
1,503,657	-	nuoM	LU632_RS08020	0.13	-1.7
1,503,688	+	nuoM	LU632_RS08020	0.15	+0.9
1,503,909	-	nuoM	LU632_RS08020	0.30	-0.7
1,503,909	-	nuoM	LU632_RS08020	0.30	-0.7
1,503,909	-	nuoM	LU632_RS08020	0.30	-2.4
1,503,909	-	nuoM	LU632_RS08020	0.30	-1.9
1,503,986	+	nuoM	LU632_RS08020	0.35	-2.1
1,503,986	+	nuoM	LU632_RS08020	0.35	-2.7
1,503,987	-	nuoM	LU632_RS08020	0.35	-1.4
1,503,987	-	nuoM	LU632_RS08020	0.35	-0.1
1,503,987	-	nuoM	LU632_RS08020	0.35	-2.8
1,504,035	+	nuoM	LU632_RS08020	0.38	-1.4
1,504,077	-	nuoM	LU632_RS08020	0.41	+0.6
1,504,119	-	nuoM	LU632_RS08020	0.43	-1.4
1,504,119	-	nuoM	LU632_RS08020	0.43	+1.2
1,504,327	+	nuoM	LU632_RS08020	0.57	-0.8
1,504,328	-	nuoM	LU632_RS08020	0.57	+0.9
1,504,356	-	nuoM	LU632_RS08020	0.59	-1.4
1,504,382	+	nuoM	LU632_RS08020	0.61	-1.9
1,504,407	-	nuoM	LU632_RS08020	0.62	-0.1
1,504,448	+	nuoM	LU632_RS08020	0.65	-0.7
1,504,448	+	nuoM	LU632_RS08020	0.65	-2.4
1,504,449	-	nuoM	LU632_RS08020	0.65	-1.1
1,504,544	+	nuoM	LU632_RS08020	0.71	+0.9
1,504,717	+	nuoM	LU632_RS08020	0.83	-2.9
1,504,717	+	nuoM	LU632_RS08020	0.83	-1.7
1,504,718	-	nuoM	LU632_RS08020	0.83	-2.1
1,504,718	-	nuoM	LU632_RS08020	0.83	-0.9
1,504,720	+	nuoM	LU632_RS08020	0.83	-2.3
1,504,720	+	nuoM	LU632_RS08020	0.83	-2.4
1,504,721	-	nuoM	LU632_RS08020	0.83	-2.3
1,504,721	-	nuoM	LU632_RS08020	0.83	-0.1
1,504,852	+				-3.3
1,504,853	-				-2.4
1,504,933	+				-0.1
1,504,947	-				-2.4
1,504,947	-				-1.9
1,505,099	-				-2.3
1,505,099	-				-2.3
1,505,199	-	nuoN	LU632_RS08025	0.15	-1.7
1,505,211	-	nuoN	LU632_RS08025	0.16	-1.7
1,505,371	+	nuoN	LU632_RS08025	0.26	-0.7
1,505,459	+	nuoN	LU632_RS08025	0.33	-0.1
1,505,459	+	nuoN	LU632_RS08025	0.33	-0.7
1,505,459	+	nuoN	LU632_RS08025	0.33	-3.8
1,505,461	+	nuoN	LU632_RS08025	0.33	-2.8
1,505,461	+	nuoN	LU632_RS08025	0.33	-2.3
1,505,461	+	nuoN	LU632_RS08025	0.33	-0.1
1,505,462	-	nuoN	LU632_RS08025	0.33	-3.3
1,505,462	-	nuoN	LU632_RS08025	0.33	-0.2
1,505,505	+	nuoN	LU632_RS08025	0.36	+1.9
1,505,569	+	nuoN	LU632_RS08025	0.40	-0.1
1,505,570	-	nuoN	LU632_RS08025	0.40	-1.1
1,505,763	-	nuoN	LU632_RS08025	0.53	-1.4
1,505,875	-	nuoN	LU632_RS08025	0.61	-0.1
1,505,883	-	nuoN	LU632_RS08025	0.62	-2.3
1,505,890	+	nuoN	LU632_RS08025	0.62	-1.1
1,505,969	+	nuoN	LU632_RS08025	0.67	-2.5
1,505,970	-	nuoN	LU632_RS08025	0.68	-1.1
1,505,970	-	nuoN	LU632_RS08025	0.68	-1.9