Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07980

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,493,454	+	nuoC	LU632_RS07975	0.52	-2.8
1,493,473	+	nuoC	LU632_RS07975	0.53	+0.9
1,493,473	+	nuoC	LU632_RS07975	0.53	-3.9
1,493,474	-	nuoC	LU632_RS07975	0.53	-0.7
1,493,474	-	nuoC	LU632_RS07975	0.53	-3.4
1,493,474	-	nuoC	LU632_RS07975	0.53	-1.9
1,493,474	-	nuoC	LU632_RS07975	0.53	-4.3
1,493,474	-	nuoC	LU632_RS07975	0.53	-4.1
1,493,475	+	nuoC	LU632_RS07975	0.53	-2.7
1,493,475	+	nuoC	LU632_RS07975	0.53	-1.4
1,493,475	+	nuoC	LU632_RS07975	0.53	-0.7
1,493,475	+	nuoC	LU632_RS07975	0.53	-2.3
1,493,476	-	nuoC	LU632_RS07975	0.54	-1.1
1,493,476	-	nuoC	LU632_RS07975	0.54	-2.0
1,493,476	-	nuoC	LU632_RS07975	0.54	+0.9
1,493,481	+	nuoC	LU632_RS07975	0.54	-0.7
1,493,482	-	nuoC	LU632_RS07975	0.54	-1.9
1,493,565	+	nuoC	LU632_RS07975	0.58	+0.1
1,493,690	-	nuoC	LU632_RS07975	0.65	-0.1
1,493,826	+	nuoC	LU632_RS07975	0.73	-1.1
1,494,009	+	nuoC	LU632_RS07975	0.83	-0.7
1,494,145	+				-1.7
1,494,146	-				-1.9
1,494,146	-				-2.0
1,494,148	+				-2.1
1,494,196	-				-0.4
1,494,269	-				-0.7
1,494,314	+				-3.2
1,494,315	-				-0.8
1,494,708	-	nuoE	LU632_RS07980	0.76	-1.4
1,494,773	+	nuoE	LU632_RS07980	0.89	-2.0
1,494,850	+				+0.9
1,495,127	+	nuoF	LU632_RS07985	0.22	-1.1
1,495,128	-	nuoF	LU632_RS07985	0.22	-0.7
1,495,128	-	nuoF	LU632_RS07985	0.22	-1.9
1,495,130	-	nuoF	LU632_RS07985	0.22	-1.7
1,495,218	-	nuoF	LU632_RS07985	0.29	-0.3
1,495,218	-	nuoF	LU632_RS07985	0.29	-3.0
1,495,218	-	nuoF	LU632_RS07985	0.29	-0.7
1,495,219	+	nuoF	LU632_RS07985	0.29	-2.4
1,495,219	+	nuoF	LU632_RS07985	0.29	+1.6
1,495,220	-	nuoF	LU632_RS07985	0.29	-2.1
1,495,220	-	nuoF	LU632_RS07985	0.29	-1.7
1,495,220	-	nuoF	LU632_RS07985	0.29	-0.7
1,495,239	-	nuoF	LU632_RS07985	0.31	-3.0
1,495,296	-	nuoF	LU632_RS07985	0.35	-3.1
1,495,364	+	nuoF	LU632_RS07985	0.40	-3.1
1,495,547	-	nuoF	LU632_RS07985	0.53	-2.8
1,495,661	+	nuoF	LU632_RS07985	0.62	-1.1
1,495,662	-	nuoF	LU632_RS07985	0.62	-3.5
1,495,662	-	nuoF	LU632_RS07985	0.62	+0.9