Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07970

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07965 and LU632_RS07970 are separated by 15 nucleotidesLU632_RS07970 and nuoC are separated by 106 nucleotides LU632_RS07965: LU632_RS07965 - NADH-quinone oxidoreductase subunit A, at 1,491,279 to 1,491,716 _RS07965 LU632_RS07970: LU632_RS07970 - NADH-quinone oxidoreductase subunit B, at 1,491,732 to 1,492,406 _RS07970 LU632_RS07975: nuoC - NADH-quinone oxidoreductase subunit C/D, at 1,492,513 to 1,494,312 nuoC Position (kb) 1491 1492 1493Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1490.816 kb on - strandat 1490.859 kb on - strandat 1490.868 kb on + strandat 1490.869 kb on - strandat 1490.869 kb on - strandat 1490.869 kb on - strandat 1491.278 kb on + strandat 1491.407 kb on + strand, within LU632_RS07965at 1491.407 kb on + strand, within LU632_RS07965at 1491.408 kb on - strand, within LU632_RS07965at 1491.408 kb on - strand, within LU632_RS07965at 1491.408 kb on - strand, within LU632_RS07965at 1491.523 kb on - strand, within LU632_RS07965at 1491.528 kb on + strand, within LU632_RS07965at 1491.528 kb on + strand, within LU632_RS07965at 1491.529 kb on - strand, within LU632_RS07965at 1491.714 kb on + strandat 1491.727 kb on + strandat 1491.728 kb on - strandat 1491.843 kb on + strand, within LU632_RS07970at 1491.843 kb on + strand, within LU632_RS07970at 1491.844 kb on - strand, within LU632_RS07970at 1491.844 kb on - strand, within LU632_RS07970at 1491.844 kb on - strand, within LU632_RS07970at 1491.894 kb on - strand, within LU632_RS07970at 1491.936 kb on + strand, within LU632_RS07970at 1491.936 kb on + strand, within LU632_RS07970at 1491.936 kb on + strand, within LU632_RS07970at 1491.936 kb on + strand, within LU632_RS07970at 1491.937 kb on - strand, within LU632_RS07970at 1491.937 kb on - strand, within LU632_RS07970at 1491.966 kb on + strand, within LU632_RS07970at 1491.967 kb on + strand, within LU632_RS07970at 1491.968 kb on - strand, within LU632_RS07970at 1491.968 kb on - strand, within LU632_RS07970at 1491.968 kb on - strand, within LU632_RS07970at 1491.968 kb on - strand, within LU632_RS07970at 1492.029 kb on - strand, within LU632_RS07970at 1492.149 kb on + strand, within LU632_RS07970at 1492.150 kb on - strand, within LU632_RS07970at 1492.158 kb on + strand, within LU632_RS07970at 1492.203 kb on + strand, within LU632_RS07970at 1492.204 kb on - strand, within LU632_RS07970at 1492.206 kb on - strand, within LU632_RS07970at 1492.236 kb on + strand, within LU632_RS07970at 1492.237 kb on - strand, within LU632_RS07970at 1492.237 kb on - strand, within LU632_RS07970at 1492.237 kb on - strand, within LU632_RS07970at 1492.238 kb on + strand, within LU632_RS07970at 1492.239 kb on - strand, within LU632_RS07970at 1492.415 kb on + strandat 1492.513 kb on - strandat 1492.524 kb on - strandat 1492.600 kb on - strandat 1492.720 kb on + strand, within nuoCat 1492.720 kb on + strand, within nuoCat 1492.720 kb on + strand, within nuoCat 1492.896 kb on + strand, within nuoCat 1492.896 kb on + strand, within nuoCat 1492.896 kb on + strand, within nuoCat 1492.897 kb on - strand, within nuoCat 1492.951 kb on - strand, within nuoCat 1492.983 kb on + strand, within nuoCat 1493.154 kb on + strand, within nuoCat 1493.154 kb on + strand, within nuoCat 1493.154 kb on + strand, within nuoCat 1493.155 kb on - strand, within nuoCat 1493.311 kb on + strand, within nuoCat 1493.311 kb on + strand, within nuoCat 1493.311 kb on + strand, within nuoCat 1493.311 kb on + strand, within nuoCat 1493.311 kb on + strand, within nuoCat 1493.311 kb on + strand, within nuoCat 1493.311 kb on + strand, within nuoCat 1493.312 kb on - strand, within nuoCat 1493.312 kb on - strand, within nuoCat 1493.312 kb on - strand, within nuoCat 1493.312 kb on - strand, within nuoCat 1493.312 kb on - strand, within nuoCat 1493.312 kb on - strand, within nuoCat 1493.313 kb on + strand, within nuoCat 1493.313 kb on + strand, within nuoCat 1493.314 kb on - strand, within nuoC

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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1,490,816 - +1.3
1,490,859 - +0.3
1,490,868 + +1.6
1,490,869 - -0.5
1,490,869 - -2.4
1,490,869 - +0.3
1,491,278 + -1.7
1,491,407 + LU632_RS07965 0.29 -0.1
1,491,407 + LU632_RS07965 0.29 -0.1
1,491,408 - LU632_RS07965 0.29 -2.3
1,491,408 - LU632_RS07965 0.29 -2.6
1,491,408 - LU632_RS07965 0.29 -0.7
1,491,523 - LU632_RS07965 0.56 -0.1
1,491,528 + LU632_RS07965 0.57 -2.2
1,491,528 + LU632_RS07965 0.57 -2.1
1,491,529 - LU632_RS07965 0.57 -0.1
1,491,714 + +2.2
1,491,727 + -1.3
1,491,728 - -2.9
1,491,843 + LU632_RS07970 0.16 -0.1
1,491,843 + LU632_RS07970 0.16 -2.4
1,491,844 - LU632_RS07970 0.17 -0.1
1,491,844 - LU632_RS07970 0.17 -2.5
1,491,844 - LU632_RS07970 0.17 -3.6
1,491,894 - LU632_RS07970 0.24 -0.7
1,491,936 + LU632_RS07970 0.30 +0.9
1,491,936 + LU632_RS07970 0.30 -0.7
1,491,936 + LU632_RS07970 0.30 -1.1
1,491,936 + LU632_RS07970 0.30 -2.2
1,491,937 - LU632_RS07970 0.30 -2.5
1,491,937 - LU632_RS07970 0.30 -2.6
1,491,966 + LU632_RS07970 0.35 -3.7
1,491,967 + LU632_RS07970 0.35 -1.1
1,491,968 - LU632_RS07970 0.35 -3.1
1,491,968 - LU632_RS07970 0.35 -0.1
1,491,968 - LU632_RS07970 0.35 -4.3
1,491,968 - LU632_RS07970 0.35 -0.1
1,492,029 - LU632_RS07970 0.44 -1.4
1,492,149 + LU632_RS07970 0.62 -2.9
1,492,150 - LU632_RS07970 0.62 -2.7
1,492,158 + LU632_RS07970 0.63 +0.9
1,492,203 + LU632_RS07970 0.70 -0.9
1,492,204 - LU632_RS07970 0.70 +0.5
1,492,206 - LU632_RS07970 0.70 -1.1
1,492,236 + LU632_RS07970 0.75 -2.1
1,492,237 - LU632_RS07970 0.75 -2.5
1,492,237 - LU632_RS07970 0.75 -3.3
1,492,237 - LU632_RS07970 0.75 -1.7
1,492,238 + LU632_RS07970 0.75 -1.1
1,492,239 - LU632_RS07970 0.75 -2.7
1,492,415 + -0.7
1,492,513 - -1.4
1,492,524 - -2.1
1,492,600 - -1.3
1,492,720 + nuoC LU632_RS07975 0.12 -1.1
1,492,720 + nuoC LU632_RS07975 0.12 -1.4
1,492,720 + nuoC LU632_RS07975 0.12 -0.7
1,492,896 + nuoC LU632_RS07975 0.21 -0.1
1,492,896 + nuoC LU632_RS07975 0.21 -4.1
1,492,896 + nuoC LU632_RS07975 0.21 +1.2
1,492,897 - nuoC LU632_RS07975 0.21 -2.1
1,492,951 - nuoC LU632_RS07975 0.24 -2.1
1,492,983 + nuoC LU632_RS07975 0.26 -1.1
1,493,154 + nuoC LU632_RS07975 0.36 -1.7
1,493,154 + nuoC LU632_RS07975 0.36 -2.1
1,493,154 + nuoC LU632_RS07975 0.36 +0.9
1,493,155 - nuoC LU632_RS07975 0.36 -3.3
1,493,311 + nuoC LU632_RS07975 0.44 -2.2
1,493,311 + nuoC LU632_RS07975 0.44 -0.8
1,493,311 + nuoC LU632_RS07975 0.44 +0.9
1,493,311 + nuoC LU632_RS07975 0.44 -1.3
1,493,311 + nuoC LU632_RS07975 0.44 -2.7
1,493,311 + nuoC LU632_RS07975 0.44 -2.4
1,493,311 + nuoC LU632_RS07975 0.44 -1.3
1,493,312 - nuoC LU632_RS07975 0.44 -4.3
1,493,312 - nuoC LU632_RS07975 0.44 -3.5
1,493,312 - nuoC LU632_RS07975 0.44 -2.3
1,493,312 - nuoC LU632_RS07975 0.44 -1.4
1,493,312 - nuoC LU632_RS07975 0.44 -2.8
1,493,312 - nuoC LU632_RS07975 0.44 -1.4
1,493,313 + nuoC LU632_RS07975 0.44 -0.7
1,493,313 + nuoC LU632_RS07975 0.44 -0.7
1,493,314 - nuoC LU632_RS07975 0.45 -2.4

Or see this region's nucleotide sequence