Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07965

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,490,664	+				-1.5
1,490,816	-				+1.3
1,490,859	-				+0.3
1,490,868	+				+1.6
1,490,869	-				-0.5
1,490,869	-				-2.4
1,490,869	-				+0.3
1,491,278	+				-1.7
1,491,407	+		LU632_RS07965	0.29	-0.1
1,491,407	+		LU632_RS07965	0.29	-0.1
1,491,408	-		LU632_RS07965	0.29	-2.3
1,491,408	-		LU632_RS07965	0.29	-2.6
1,491,408	-		LU632_RS07965	0.29	-0.7
1,491,523	-		LU632_RS07965	0.56	-0.1
1,491,528	+		LU632_RS07965	0.57	-2.2
1,491,528	+		LU632_RS07965	0.57	-2.1
1,491,529	-		LU632_RS07965	0.57	-0.1
1,491,714	+				+2.2
1,491,727	+				-1.3
1,491,728	-				-2.9
1,491,843	+		LU632_RS07970	0.16	-0.1
1,491,843	+		LU632_RS07970	0.16	-2.4
1,491,844	-		LU632_RS07970	0.17	-0.1
1,491,844	-		LU632_RS07970	0.17	-2.5
1,491,844	-		LU632_RS07970	0.17	-3.6
1,491,894	-		LU632_RS07970	0.24	-0.7
1,491,936	+		LU632_RS07970	0.30	+0.9
1,491,936	+		LU632_RS07970	0.30	-0.7
1,491,936	+		LU632_RS07970	0.30	-1.1
1,491,936	+		LU632_RS07970	0.30	-2.2
1,491,937	-		LU632_RS07970	0.30	-2.5
1,491,937	-		LU632_RS07970	0.30	-2.6
1,491,966	+		LU632_RS07970	0.35	-3.7
1,491,967	+		LU632_RS07970	0.35	-1.1
1,491,968	-		LU632_RS07970	0.35	-3.1
1,491,968	-		LU632_RS07970	0.35	-0.1
1,491,968	-		LU632_RS07970	0.35	-4.3
1,491,968	-		LU632_RS07970	0.35	-0.1
1,492,029	-		LU632_RS07970	0.44	-1.4
1,492,149	+		LU632_RS07970	0.62	-2.9
1,492,150	-		LU632_RS07970	0.62	-2.7
1,492,158	+		LU632_RS07970	0.63	+0.9
1,492,203	+		LU632_RS07970	0.70	-0.9
1,492,204	-		LU632_RS07970	0.70	+0.5
1,492,206	-		LU632_RS07970	0.70	-1.1
1,492,236	+		LU632_RS07970	0.75	-2.1
1,492,237	-		LU632_RS07970	0.75	-2.5
1,492,237	-		LU632_RS07970	0.75	-3.3
1,492,237	-		LU632_RS07970	0.75	-1.7
1,492,238	+		LU632_RS07970	0.75	-1.1
1,492,239	-		LU632_RS07970	0.75	-2.7
1,492,415	+				-0.7
1,492,513	-				-1.4
1,492,524	-				-2.1
1,492,600	-				-1.3