Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07860

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,467,704	+	dedD	LU632_RS07855	0.33	-1.1
1,467,842	+	dedD	LU632_RS07855	0.52	-1.1
1,467,960	+	dedD	LU632_RS07855	0.68	-0.1
1,467,960	+	dedD	LU632_RS07855	0.68	+2.5
1,467,960	+	dedD	LU632_RS07855	0.68	-0.1
1,467,961	-	dedD	LU632_RS07855	0.68	-0.1
1,467,961	-	dedD	LU632_RS07855	0.68	+0.2
1,468,086	-	dedD	LU632_RS07855	0.85	-0.7
1,468,212	-				-1.9
1,468,214	+				-1.7
1,468,230	+				-0.0
1,468,234	+				-0.1
1,468,235	-				+1.3
1,468,254	+				-0.1
1,468,301	+				+1.5
1,468,311	-				+1.7
1,468,381	+				-0.7
1,468,646	+				-1.2
1,468,646	+				-1.1
1,468,646	+				-1.0
1,468,646	+				-1.1
1,468,647	-				-0.1
1,468,654	+				+0.9
1,468,659	+				-1.0
1,468,659	+				+2.2
1,468,660	-				-0.7
1,468,726	+	cvpA	LU632_RS07860	0.20	-0.1
1,468,726	+	cvpA	LU632_RS07860	0.20	-1.5
1,468,727	-	cvpA	LU632_RS07860	0.20	+0.9
1,468,727	-	cvpA	LU632_RS07860	0.20	-1.1
1,468,760	+	cvpA	LU632_RS07860	0.27	+0.7
1,468,763	+	cvpA	LU632_RS07860	0.28	-0.4
1,468,764	-	cvpA	LU632_RS07860	0.28	-2.4
1,468,840	+	cvpA	LU632_RS07860	0.44	+0.9
1,469,057	+				-1.9
1,469,058	-				+0.1
1,469,058	-				+0.2
1,469,081	+				-0.4
1,469,081	+				+0.9
1,469,092	+				+0.1
1,469,093	-				-1.7
1,469,093	-				-4.1
1,469,164	-				-5.5
1,469,207	-				-1.4
1,469,207	-				-1.4
1,469,225	+				-2.9
1,469,226	-				-6.0
1,469,226	-				+0.9
1,469,343	+	purF	LU632_RS07865	0.12	-1.9
1,469,343	+	purF	LU632_RS07865	0.12	-1.1
1,469,343	+	purF	LU632_RS07865	0.12	-1.4
1,469,356	-	purF	LU632_RS07865	0.13	-2.3
1,469,557	-	purF	LU632_RS07865	0.26	-0.1
1,469,591	-	purF	LU632_RS07865	0.29	-5.5
1,469,767	+	purF	LU632_RS07865	0.40	-4.1
1,469,767	+	purF	LU632_RS07865	0.40	-3.6
1,469,767	+	purF	LU632_RS07865	0.40	-3.7
1,469,767	+	purF	LU632_RS07865	0.40	-6.1
1,469,768	-	purF	LU632_RS07865	0.40	-2.4
1,469,768	-	purF	LU632_RS07865	0.40	-5.4
1,469,769	+	purF	LU632_RS07865	0.40	-4.3
1,469,769	+	purF	LU632_RS07865	0.40	-4.1
1,469,769	+	purF	LU632_RS07865	0.40	-5.2
1,469,769	+	purF	LU632_RS07865	0.40	-2.8
1,469,769	+	purF	LU632_RS07865	0.40	-3.3
1,469,769	+	purF	LU632_RS07865	0.40	-3.9
1,469,770	-	purF	LU632_RS07865	0.41	-4.3
1,469,770	-	purF	LU632_RS07865	0.41	-2.4
1,469,770	-	purF	LU632_RS07865	0.41	-2.6
1,469,804	+	purF	LU632_RS07865	0.43	-3.2
1,469,804	+	purF	LU632_RS07865	0.43	-3.8
1,469,805	-	purF	LU632_RS07865	0.43	-3.6
1,469,848	+	purF	LU632_RS07865	0.46	-2.3
1,469,848	+	purF	LU632_RS07865	0.46	-2.9
1,469,849	-	purF	LU632_RS07865	0.46	-3.1
1,469,905	-	purF	LU632_RS07865	0.49	-5.1
1,469,905	-	purF	LU632_RS07865	0.49	-2.8
1,469,923	+	purF	LU632_RS07865	0.51	-4.3
1,469,923	+	purF	LU632_RS07865	0.51	-1.1
1,469,924	-	purF	LU632_RS07865	0.51	-4.3
1,469,971	+	purF	LU632_RS07865	0.54	-4.3
1,469,989	-	purF	LU632_RS07865	0.55	-0.1
1,470,041	+	purF	LU632_RS07865	0.58	-2.1
1,470,041	+	purF	LU632_RS07865	0.58	-5.6
1,470,041	+	purF	LU632_RS07865	0.58	-3.9
1,470,042	-	purF	LU632_RS07865	0.58	-4.6