Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07775

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,448,332	+	prmB	LU632_RS07770	0.17	-0.7
1,448,332	+	prmB	LU632_RS07770	0.17	+0.6
1,448,333	-	prmB	LU632_RS07770	0.17	+0.9
1,448,359	-	prmB	LU632_RS07770	0.20	-0.7
1,448,359	-	prmB	LU632_RS07770	0.20	-1.2
1,448,382	+	prmB	LU632_RS07770	0.22	+1.2
1,448,382	+	prmB	LU632_RS07770	0.22	-0.1
1,448,421	+	prmB	LU632_RS07770	0.27	-2.5
1,448,434	-	prmB	LU632_RS07770	0.28	-1.9
1,448,434	-	prmB	LU632_RS07770	0.28	-1.5
1,448,486	-	prmB	LU632_RS07770	0.34	-1.1
1,448,531	+	prmB	LU632_RS07770	0.38	+0.9
1,448,577	+	prmB	LU632_RS07770	0.43	-4.2
1,448,578	-	prmB	LU632_RS07770	0.43	+0.6
1,448,586	+	prmB	LU632_RS07770	0.44	+2.1
1,448,586	+	prmB	LU632_RS07770	0.44	+2.3
1,448,586	+	prmB	LU632_RS07770	0.44	-0.3
1,448,587	-	prmB	LU632_RS07770	0.44	+0.8
1,448,593	-	prmB	LU632_RS07770	0.45	-1.0
1,448,657	+	prmB	LU632_RS07770	0.52	-0.7
1,448,657	+	prmB	LU632_RS07770	0.52	+0.9
1,448,658	-	prmB	LU632_RS07770	0.52	-1.2
1,448,661	+	prmB	LU632_RS07770	0.52	+0.9
1,448,661	+	prmB	LU632_RS07770	0.52	+1.1
1,448,697	+	prmB	LU632_RS07770	0.56	-0.7
1,448,801	-	prmB	LU632_RS07770	0.67	-2.3
1,448,817	+	prmB	LU632_RS07770	0.69	-2.1
1,448,818	-	prmB	LU632_RS07770	0.69	+0.9
1,448,905	-	prmB	LU632_RS07770	0.78	-0.4
1,448,976	+	prmB	LU632_RS07770	0.86	-0.4
1,448,976	+	prmB	LU632_RS07770	0.86	+0.9
1,449,045	+				+0.6
1,449,045	+				-1.0
1,449,046	-				-3.0
1,449,046	-				-1.8
1,449,046	-				+1.1
1,449,097	-				-0.4
1,449,103	+				-0.7
1,449,205	+				-0.1
1,449,205	+				+1.7
1,449,222	-				-2.7
1,449,245	-				-2.4
1,449,263	+				+0.5
1,449,291	-				-3.4
1,449,439	-	aroC	LU632_RS07775	0.15	-2.7
1,449,439	-	aroC	LU632_RS07775	0.15	-1.4
1,449,439	-	aroC	LU632_RS07775	0.15	-4.8
1,449,504	-	aroC	LU632_RS07775	0.21	-1.7
1,449,559	-	aroC	LU632_RS07775	0.26	-3.0
1,449,618	+	aroC	LU632_RS07775	0.31	-0.3
1,449,619	-	aroC	LU632_RS07775	0.32	-0.1
1,449,619	-	aroC	LU632_RS07775	0.32	-2.0
1,449,619	-	aroC	LU632_RS07775	0.32	-2.6
1,449,619	-	aroC	LU632_RS07775	0.32	-2.3
1,450,157	+	aroC	LU632_RS07775	0.81	-2.9
1,450,306	+				-0.1
1,450,307	-				-2.8
1,450,307	-				-0.7
1,450,406	+				+0.5
1,450,409	+				-1.2
1,450,410	-				-1.7
1,450,410	-				+2.8
1,450,410	-				+0.7
1,450,410	-				-2.9
1,450,504	-	mepA	LU632_RS07780	0.16	-2.6
1,450,507	-	mepA	LU632_RS07780	0.17	+1.3
1,450,576	+	mepA	LU632_RS07780	0.25	+1.0
1,450,595	+	mepA	LU632_RS07780	0.28	+1.6
1,450,596	-	mepA	LU632_RS07780	0.28	-2.1
1,450,602	+	mepA	LU632_RS07780	0.29	+0.7
1,450,627	+	mepA	LU632_RS07780	0.32	+0.2
1,450,628	-	mepA	LU632_RS07780	0.32	-1.3
1,450,628	-	mepA	LU632_RS07780	0.32	+0.6
1,450,628	-	mepA	LU632_RS07780	0.32	-1.0
1,450,629	+	mepA	LU632_RS07780	0.32	+1.2
1,450,629	+	mepA	LU632_RS07780	0.32	+0.9
1,450,629	+	mepA	LU632_RS07780	0.32	+1.4
1,450,629	+	mepA	LU632_RS07780	0.32	+1.8
1,450,629	+	mepA	LU632_RS07780	0.32	-1.1
1,450,630	-	mepA	LU632_RS07780	0.32	-0.4
1,450,731	+	mepA	LU632_RS07780	0.45	+0.6
1,450,794	+	mepA	LU632_RS07780	0.52	-1.1
1,450,794	+	mepA	LU632_RS07780	0.52	-1.9
1,450,795	-	mepA	LU632_RS07780	0.53	-1.9
1,450,885	+	mepA	LU632_RS07780	0.64	+2.8
1,450,999	+	mepA	LU632_RS07780	0.78	-0.1
1,451,000	-	mepA	LU632_RS07780	0.78	-1.4
1,451,000	-	mepA	LU632_RS07780	0.78	-1.2
1,451,000	-	mepA	LU632_RS07780	0.78	+1.7
1,451,000	-	mepA	LU632_RS07780	0.78	-1.1
1,451,154	+				-0.1
1,451,206	+				+2.5
1,451,207	-				+1.5
1,451,263	+				+0.1