Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07640

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS07625 and LU632_RS07630 overlap by 8 nucleotidesLU632_RS07630 and LU632_RS07635 overlap by 4 nucleotidesLU632_RS07635 and LU632_RS07640 overlap by 11 nucleotidesLU632_RS07640 and LU632_RS07645 are separated by 2 nucleotidesLU632_RS07645 and LU632_RS07650 are separated by 130 nucleotidesLU632_RS07650 and LU632_RS07655 are separated by 130 nucleotides LU632_RS07625: LU632_RS07625 - hypothetical protein, at 1,431,347 to 1,431,658 _RS07625 LU632_RS07630: LU632_RS07630 - hypothetical protein, at 1,431,651 to 1,431,983 _RS07630 LU632_RS07635: LU632_RS07635 - hypothetical protein, at 1,431,980 to 1,432,633 _RS07635 LU632_RS07640: LU632_RS07640 - transglycosylase SLT domain-containing protein, at 1,432,623 to 1,433,345 _RS07640 LU632_RS07645: LU632_RS07645 - putative holin, at 1,433,348 to 1,433,698 _RS07645 LU632_RS07650: LU632_RS07650 - hypothetical protein, at 1,433,829 to 1,434,152 _RS07650 LU632_RS07655: LU632_RS07655 - IS481 family transposase, at 1,434,283 to 1,435,323 _RS07655 Position (kb) 1432 1433 1434Strain fitness (log2 ratio) -2 -1 0 1 2at 1431.706 kb on + strand, within LU632_RS07630at 1431.706 kb on + strand, within LU632_RS07630at 1431.706 kb on + strand, within LU632_RS07630at 1431.707 kb on - strand, within LU632_RS07630at 1431.751 kb on + strand, within LU632_RS07630at 1431.751 kb on + strand, within LU632_RS07630at 1431.769 kb on + strand, within LU632_RS07630at 1431.770 kb on - strand, within LU632_RS07630at 1431.770 kb on - strand, within LU632_RS07630at 1431.894 kb on - strand, within LU632_RS07630at 1431.908 kb on + strand, within LU632_RS07630at 1431.909 kb on - strand, within LU632_RS07630at 1432.020 kb on - strandat 1432.224 kb on + strand, within LU632_RS07635at 1432.224 kb on + strand, within LU632_RS07635at 1432.246 kb on + strand, within LU632_RS07635at 1432.309 kb on + strand, within LU632_RS07635at 1432.365 kb on + strand, within LU632_RS07635at 1432.366 kb on - strand, within LU632_RS07635at 1432.464 kb on + strand, within LU632_RS07635at 1432.465 kb on - strand, within LU632_RS07635at 1432.561 kb on - strand, within LU632_RS07635at 1432.589 kb on + strandat 1432.832 kb on - strand, within LU632_RS07640at 1432.853 kb on + strand, within LU632_RS07640at 1432.854 kb on - strand, within LU632_RS07640at 1432.854 kb on - strand, within LU632_RS07640at 1432.903 kb on + strand, within LU632_RS07640at 1432.904 kb on - strand, within LU632_RS07640at 1432.904 kb on - strand, within LU632_RS07640at 1433.000 kb on + strand, within LU632_RS07640at 1433.000 kb on + strand, within LU632_RS07640at 1433.255 kb on - strand, within LU632_RS07640at 1433.258 kb on + strand, within LU632_RS07640at 1433.258 kb on + strand, within LU632_RS07640at 1433.406 kb on - strand, within LU632_RS07645at 1433.514 kb on - strand, within LU632_RS07645at 1433.571 kb on + strand, within LU632_RS07645at 1433.572 kb on - strand, within LU632_RS07645at 1433.764 kb on + strandat 1433.765 kb on - strandat 1433.766 kb on + strandat 1433.766 kb on + strandat 1433.766 kb on + strandat 1433.767 kb on - strandat 1433.767 kb on - strandat 1433.904 kb on + strand, within LU632_RS07650at 1434.074 kb on + strand, within LU632_RS07650at 1434.082 kb on + strand, within LU632_RS07650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
remove
1,431,706 + LU632_RS07630 0.17 +0.7
1,431,706 + LU632_RS07630 0.17 -2.1
1,431,706 + LU632_RS07630 0.17 -0.3
1,431,707 - LU632_RS07630 0.17 +0.5
1,431,751 + LU632_RS07630 0.30 +0.8
1,431,751 + LU632_RS07630 0.30 -0.1
1,431,769 + LU632_RS07630 0.35 +1.2
1,431,770 - LU632_RS07630 0.36 +0.9
1,431,770 - LU632_RS07630 0.36 +1.7
1,431,894 - LU632_RS07630 0.73 -0.7
1,431,908 + LU632_RS07630 0.77 +0.3
1,431,909 - LU632_RS07630 0.77 +1.3
1,432,020 - -1.7
1,432,224 + LU632_RS07635 0.37 +0.1
1,432,224 + LU632_RS07635 0.37 +2.0
1,432,246 + LU632_RS07635 0.41 -2.4
1,432,309 + LU632_RS07635 0.50 -0.3
1,432,365 + LU632_RS07635 0.59 +1.9
1,432,366 - LU632_RS07635 0.59 +0.5
1,432,464 + LU632_RS07635 0.74 -1.7
1,432,465 - LU632_RS07635 0.74 -0.3
1,432,561 - LU632_RS07635 0.89 +0.2
1,432,589 + -1.7
1,432,832 - LU632_RS07640 0.29 -0.7
1,432,853 + LU632_RS07640 0.32 +0.4
1,432,854 - LU632_RS07640 0.32 +0.9
1,432,854 - LU632_RS07640 0.32 +0.9
1,432,903 + LU632_RS07640 0.39 +1.9
1,432,904 - LU632_RS07640 0.39 -0.5
1,432,904 - LU632_RS07640 0.39 +0.7
1,433,000 + LU632_RS07640 0.52 +1.5
1,433,000 + LU632_RS07640 0.52 -2.1
1,433,255 - LU632_RS07640 0.87 +0.8
1,433,258 + LU632_RS07640 0.88 +2.0
1,433,258 + LU632_RS07640 0.88 +1.3
1,433,406 - LU632_RS07645 0.17 +0.5
1,433,514 - LU632_RS07645 0.47 +0.4
1,433,571 + LU632_RS07645 0.64 +0.7
1,433,572 - LU632_RS07645 0.64 -0.4
1,433,764 + -2.3
1,433,765 - -0.5
1,433,766 + -2.7
1,433,766 + +1.7
1,433,766 + +0.5
1,433,767 - +1.2
1,433,767 - +0.4
1,433,904 + LU632_RS07650 0.23 +1.0
1,434,074 + LU632_RS07650 0.76 +0.9
1,434,082 + LU632_RS07650 0.78 -0.7

Or see this region's nucleotide sequence