Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07625

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07615 and LU632_RS07620 overlap by 4 nucleotidesLU632_RS07620 and LU632_RS07625 overlap by 1 nucleotidesLU632_RS07625 and LU632_RS07630 overlap by 8 nucleotidesLU632_RS07630 and LU632_RS07635 overlap by 4 nucleotidesLU632_RS07635 and LU632_RS07640 overlap by 11 nucleotides LU632_RS07615: LU632_RS07615 - hypothetical protein, at 1,429,282 to 1,430,805 _RS07615 LU632_RS07620: LU632_RS07620 - DUF3486 family protein, at 1,430,802 to 1,431,347 _RS07620 LU632_RS07625: LU632_RS07625 - hypothetical protein, at 1,431,347 to 1,431,658 _RS07625 LU632_RS07630: LU632_RS07630 - hypothetical protein, at 1,431,651 to 1,431,983 _RS07630 LU632_RS07635: LU632_RS07635 - hypothetical protein, at 1,431,980 to 1,432,633 _RS07635 LU632_RS07640: LU632_RS07640 - transglycosylase SLT domain-containing protein, at 1,432,623 to 1,433,345 _RS07640 Position (kb) 1431 1432Strain fitness (log2 ratio) -2 -1 0 1 2at 1430.460 kb on - strand, within LU632_RS07615at 1430.588 kb on + strand, within LU632_RS07615at 1430.597 kb on + strand, within LU632_RS07615at 1430.597 kb on + strand, within LU632_RS07615at 1430.598 kb on - strand, within LU632_RS07615at 1430.598 kb on - strand, within LU632_RS07615at 1430.598 kb on - strand, within LU632_RS07615at 1430.598 kb on - strand, within LU632_RS07615at 1430.601 kb on - strand, within LU632_RS07615at 1430.641 kb on - strand, within LU632_RS07615at 1430.641 kb on - strand, within LU632_RS07615at 1430.641 kb on - strand, within LU632_RS07615at 1430.715 kb on + strandat 1430.715 kb on + strandat 1430.716 kb on - strandat 1430.716 kb on - strandat 1430.723 kb on - strandat 1430.783 kb on - strandat 1430.785 kb on + strandat 1430.785 kb on + strandat 1431.223 kb on + strand, within LU632_RS07620at 1431.327 kb on + strandat 1431.328 kb on - strandat 1431.328 kb on - strandat 1431.400 kb on + strand, within LU632_RS07625at 1431.401 kb on - strand, within LU632_RS07625at 1431.401 kb on - strand, within LU632_RS07625at 1431.403 kb on - strand, within LU632_RS07625at 1431.495 kb on + strand, within LU632_RS07625at 1431.582 kb on + strand, within LU632_RS07625at 1431.706 kb on + strand, within LU632_RS07630at 1431.706 kb on + strand, within LU632_RS07630at 1431.706 kb on + strand, within LU632_RS07630at 1431.707 kb on - strand, within LU632_RS07630at 1431.751 kb on + strand, within LU632_RS07630at 1431.751 kb on + strand, within LU632_RS07630at 1431.769 kb on + strand, within LU632_RS07630at 1431.770 kb on - strand, within LU632_RS07630at 1431.770 kb on - strand, within LU632_RS07630at 1431.894 kb on - strand, within LU632_RS07630at 1431.908 kb on + strand, within LU632_RS07630at 1431.909 kb on - strand, within LU632_RS07630at 1432.020 kb on - strandat 1432.224 kb on + strand, within LU632_RS07635at 1432.224 kb on + strand, within LU632_RS07635at 1432.246 kb on + strand, within LU632_RS07635at 1432.309 kb on + strand, within LU632_RS07635at 1432.365 kb on + strand, within LU632_RS07635at 1432.366 kb on - strand, within LU632_RS07635at 1432.464 kb on + strand, within LU632_RS07635at 1432.465 kb on - strand, within LU632_RS07635at 1432.561 kb on - strand, within LU632_RS07635at 1432.589 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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1,430,460 - LU632_RS07615 0.77 -0.8
1,430,588 + LU632_RS07615 0.86 +0.4
1,430,597 + LU632_RS07615 0.86 -1.4
1,430,597 + LU632_RS07615 0.86 -1.1
1,430,598 - LU632_RS07615 0.86 +0.9
1,430,598 - LU632_RS07615 0.86 -0.5
1,430,598 - LU632_RS07615 0.86 +1.7
1,430,598 - LU632_RS07615 0.86 -0.6
1,430,601 - LU632_RS07615 0.87 +1.0
1,430,641 - LU632_RS07615 0.89 +1.1
1,430,641 - LU632_RS07615 0.89 -0.2
1,430,641 - LU632_RS07615 0.89 +2.0
1,430,715 + -0.1
1,430,715 + +1.9
1,430,716 - +1.1
1,430,716 - -0.8
1,430,723 - -0.2
1,430,783 - +0.6
1,430,785 + +0.4
1,430,785 + -0.5
1,431,223 + LU632_RS07620 0.77 +1.9
1,431,327 + +0.2
1,431,328 - +0.1
1,431,328 - +2.7
1,431,400 + LU632_RS07625 0.17 +2.6
1,431,401 - LU632_RS07625 0.17 +0.3
1,431,401 - LU632_RS07625 0.17 +1.3
1,431,403 - LU632_RS07625 0.18 -0.2
1,431,495 + LU632_RS07625 0.47 -1.1
1,431,582 + LU632_RS07625 0.75 +2.0
1,431,706 + LU632_RS07630 0.17 +0.7
1,431,706 + LU632_RS07630 0.17 -2.1
1,431,706 + LU632_RS07630 0.17 -0.3
1,431,707 - LU632_RS07630 0.17 +0.5
1,431,751 + LU632_RS07630 0.30 +0.8
1,431,751 + LU632_RS07630 0.30 -0.1
1,431,769 + LU632_RS07630 0.35 +1.2
1,431,770 - LU632_RS07630 0.36 +0.9
1,431,770 - LU632_RS07630 0.36 +1.7
1,431,894 - LU632_RS07630 0.73 -0.7
1,431,908 + LU632_RS07630 0.77 +0.3
1,431,909 - LU632_RS07630 0.77 +1.3
1,432,020 - -1.7
1,432,224 + LU632_RS07635 0.37 +0.1
1,432,224 + LU632_RS07635 0.37 +2.0
1,432,246 + LU632_RS07635 0.41 -2.4
1,432,309 + LU632_RS07635 0.50 -0.3
1,432,365 + LU632_RS07635 0.59 +1.9
1,432,366 - LU632_RS07635 0.59 +0.5
1,432,464 + LU632_RS07635 0.74 -1.7
1,432,465 - LU632_RS07635 0.74 -0.3
1,432,561 - LU632_RS07635 0.89 +0.2
1,432,589 + -1.7

Or see this region's nucleotide sequence