Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07570

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07565 and LU632_RS07570 overlap by 11 nucleotidesLU632_RS07570 and LU632_RS07575 overlap by 1 nucleotidesLU632_RS07575 and LU632_RS07580 overlap by 1 nucleotidesLU632_RS07580 and LU632_RS07585 are separated by 1 nucleotides LU632_RS07565: LU632_RS07565 - phage tail sheath subtilisin-like domain-containing protein, at 1,421,307 to 1,422,734 _RS07565 LU632_RS07570: LU632_RS07570 - hypothetical protein, at 1,422,724 to 1,422,975 _RS07570 LU632_RS07575: LU632_RS07575 - Gp37 family protein, at 1,422,975 to 1,423,439 _RS07575 LU632_RS07580: LU632_RS07580 - DUF1320 domain-containing protein, at 1,423,439 to 1,423,885 _RS07580 LU632_RS07585: LU632_RS07585 - DUF2190 family protein, at 1,423,887 to 1,424,243 _RS07585 Position (kb) 1422 1423Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1421.833 kb on + strand, within LU632_RS07565at 1421.921 kb on - strand, within LU632_RS07565at 1422.043 kb on + strand, within LU632_RS07565at 1422.043 kb on + strand, within LU632_RS07565at 1422.044 kb on - strand, within LU632_RS07565at 1422.247 kb on + strand, within LU632_RS07565at 1422.247 kb on + strand, within LU632_RS07565at 1422.247 kb on + strand, within LU632_RS07565at 1422.247 kb on + strand, within LU632_RS07565at 1422.248 kb on - strand, within LU632_RS07565at 1422.248 kb on - strand, within LU632_RS07565at 1422.248 kb on - strand, within LU632_RS07565at 1422.248 kb on - strand, within LU632_RS07565at 1422.251 kb on + strand, within LU632_RS07565at 1422.251 kb on + strand, within LU632_RS07565at 1422.251 kb on + strand, within LU632_RS07565at 1422.251 kb on + strand, within LU632_RS07565at 1422.251 kb on + strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.253 kb on + strand, within LU632_RS07565at 1422.254 kb on - strand, within LU632_RS07565at 1422.254 kb on - strand, within LU632_RS07565at 1422.349 kb on + strand, within LU632_RS07565at 1422.438 kb on + strand, within LU632_RS07565at 1422.439 kb on - strand, within LU632_RS07565at 1422.465 kb on - strand, within LU632_RS07565at 1422.520 kb on + strand, within LU632_RS07565at 1422.521 kb on - strand, within LU632_RS07565at 1422.611 kb on + strandat 1422.721 kb on + strandat 1422.725 kb on + strandat 1422.726 kb on - strandat 1422.866 kb on + strand, within LU632_RS07570at 1422.866 kb on + strand, within LU632_RS07570at 1422.991 kb on + strandat 1422.991 kb on + strandat 1422.991 kb on + strandat 1422.992 kb on - strandat 1422.992 kb on - strandat 1423.023 kb on + strand, within LU632_RS07575at 1423.072 kb on + strand, within LU632_RS07575at 1423.072 kb on + strand, within LU632_RS07575at 1423.089 kb on + strand, within LU632_RS07575at 1423.090 kb on - strand, within LU632_RS07575at 1423.124 kb on + strand, within LU632_RS07575at 1423.303 kb on + strand, within LU632_RS07575at 1423.304 kb on - strand, within LU632_RS07575at 1423.304 kb on - strand, within LU632_RS07575at 1423.304 kb on - strand, within LU632_RS07575at 1423.367 kb on - strand, within LU632_RS07575at 1423.518 kb on - strand, within LU632_RS07580at 1423.881 kb on + strandat 1423.881 kb on + strandat 1423.881 kb on + strandat 1423.882 kb on - strandat 1423.882 kb on - strandat 1423.882 kb on - strandat 1423.882 kb on - strandat 1423.885 kb on + strandat 1423.886 kb on - strandat 1423.886 kb on - strandat 1423.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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1,421,833 + LU632_RS07565 0.37 +3.1
1,421,921 - LU632_RS07565 0.43 -0.1
1,422,043 + LU632_RS07565 0.52 +0.4
1,422,043 + LU632_RS07565 0.52 -2.1
1,422,044 - LU632_RS07565 0.52 +0.1
1,422,247 + LU632_RS07565 0.66 +0.5
1,422,247 + LU632_RS07565 0.66 +0.6
1,422,247 + LU632_RS07565 0.66 -0.6
1,422,247 + LU632_RS07565 0.66 +0.6
1,422,248 - LU632_RS07565 0.66 -0.1
1,422,248 - LU632_RS07565 0.66 -0.5
1,422,248 - LU632_RS07565 0.66 +0.0
1,422,248 - LU632_RS07565 0.66 -3.7
1,422,251 + LU632_RS07565 0.66 -0.6
1,422,251 + LU632_RS07565 0.66 -0.2
1,422,251 + LU632_RS07565 0.66 -2.5
1,422,251 + LU632_RS07565 0.66 +0.2
1,422,251 + LU632_RS07565 0.66 +0.7
1,422,252 - LU632_RS07565 0.66 -1.9
1,422,252 - LU632_RS07565 0.66 +0.4
1,422,252 - LU632_RS07565 0.66 -0.9
1,422,252 - LU632_RS07565 0.66 +0.2
1,422,252 - LU632_RS07565 0.66 -0.4
1,422,252 - LU632_RS07565 0.66 +0.9
1,422,253 + LU632_RS07565 0.66 +0.0
1,422,254 - LU632_RS07565 0.66 +0.9
1,422,254 - LU632_RS07565 0.66 -1.1
1,422,349 + LU632_RS07565 0.73 +1.1
1,422,438 + LU632_RS07565 0.79 -2.4
1,422,439 - LU632_RS07565 0.79 +0.2
1,422,465 - LU632_RS07565 0.81 -2.1
1,422,520 + LU632_RS07565 0.85 +0.4
1,422,521 - LU632_RS07565 0.85 -0.8
1,422,611 + +0.8
1,422,721 + +0.1
1,422,725 + -2.2
1,422,726 - +2.5
1,422,866 + LU632_RS07570 0.56 +1.3
1,422,866 + LU632_RS07570 0.56 -0.6
1,422,991 + -1.1
1,422,991 + -0.1
1,422,991 + -1.0
1,422,992 - +0.5
1,422,992 - -1.2
1,423,023 + LU632_RS07575 0.10 -0.4
1,423,072 + LU632_RS07575 0.21 +0.5
1,423,072 + LU632_RS07575 0.21 -0.6
1,423,089 + LU632_RS07575 0.25 +0.4
1,423,090 - LU632_RS07575 0.25 -1.4
1,423,124 + LU632_RS07575 0.32 +0.7
1,423,303 + LU632_RS07575 0.71 +0.9
1,423,304 - LU632_RS07575 0.71 -0.4
1,423,304 - LU632_RS07575 0.71 -0.7
1,423,304 - LU632_RS07575 0.71 -1.4
1,423,367 - LU632_RS07575 0.84 -0.2
1,423,518 - LU632_RS07580 0.18 -0.3
1,423,881 + +3.0
1,423,881 + +1.0
1,423,881 + +0.9
1,423,882 - -1.4
1,423,882 - +1.0
1,423,882 - -3.3
1,423,882 - +0.9
1,423,885 + +0.9
1,423,886 - +0.9
1,423,886 - +0.3
1,423,886 - +2.9

Or see this region's nucleotide sequence