Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07560

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07545 and LU632_RS07550 are separated by 92 nucleotidesLU632_RS07550 and LU632_RS07555 overlap by 59 nucleotidesLU632_RS07555 and LU632_RS07560 are separated by 128 nucleotidesLU632_RS07560 and LU632_RS07565 overlap by 1 nucleotides LU632_RS07545: LU632_RS07545 - phage tail tape measure protein, at 1,418,795 to 1,420,147 _RS07545 LU632_RS07550: LU632_RS07550 - GpE family phage tail protein, at 1,420,240 to 1,420,380 _RS07550 LU632_RS07555: LU632_RS07555 - phage tail assembly protein, at 1,420,322 to 1,420,657 _RS07555 LU632_RS07560: LU632_RS07560 - phage major tail tube protein, at 1,420,786 to 1,421,307 _RS07560 LU632_RS07565: LU632_RS07565 - phage tail sheath subtilisin-like domain-containing protein, at 1,421,307 to 1,422,734 _RS07565 Position (kb) 1420 1421 1422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1419.817 kb on - strand, within LU632_RS07545at 1419.988 kb on - strand, within LU632_RS07545at 1420.007 kb on + strand, within LU632_RS07545at 1420.199 kb on + strandat 1420.200 kb on - strandat 1420.205 kb on - strandat 1420.241 kb on + strandat 1420.241 kb on + strandat 1420.241 kb on + strandat 1420.242 kb on - strandat 1420.315 kb on + strand, within LU632_RS07550at 1420.378 kb on + strandat 1420.379 kb on - strandat 1420.440 kb on + strand, within LU632_RS07555at 1420.441 kb on + strand, within LU632_RS07555at 1420.466 kb on - strand, within LU632_RS07555at 1420.466 kb on - strand, within LU632_RS07555at 1420.528 kb on + strand, within LU632_RS07555at 1420.529 kb on - strand, within LU632_RS07555at 1420.532 kb on + strand, within LU632_RS07555at 1420.589 kb on + strand, within LU632_RS07555at 1420.670 kb on - strandat 1420.670 kb on - strandat 1420.670 kb on - strandat 1420.673 kb on + strandat 1420.688 kb on - strandat 1420.688 kb on - strandat 1420.712 kb on + strandat 1420.713 kb on - strandat 1420.726 kb on - strandat 1420.800 kb on + strandat 1420.801 kb on - strandat 1420.846 kb on - strand, within LU632_RS07560at 1420.901 kb on + strand, within LU632_RS07560at 1420.901 kb on + strand, within LU632_RS07560at 1421.187 kb on + strand, within LU632_RS07560at 1421.262 kb on + strandat 1421.264 kb on + strandat 1421.264 kb on + strandat 1421.265 kb on - strandat 1421.268 kb on + strandat 1421.268 kb on + strandat 1421.269 kb on - strandat 1421.269 kb on - strandat 1421.336 kb on - strandat 1421.506 kb on + strand, within LU632_RS07565at 1421.558 kb on + strand, within LU632_RS07565at 1421.566 kb on + strand, within LU632_RS07565at 1421.566 kb on + strand, within LU632_RS07565at 1421.567 kb on - strand, within LU632_RS07565at 1421.567 kb on - strand, within LU632_RS07565at 1421.567 kb on - strand, within LU632_RS07565at 1421.581 kb on + strand, within LU632_RS07565at 1421.833 kb on + strand, within LU632_RS07565at 1421.921 kb on - strand, within LU632_RS07565at 1422.043 kb on + strand, within LU632_RS07565at 1422.043 kb on + strand, within LU632_RS07565at 1422.044 kb on - strand, within LU632_RS07565at 1422.247 kb on + strand, within LU632_RS07565at 1422.247 kb on + strand, within LU632_RS07565at 1422.247 kb on + strand, within LU632_RS07565at 1422.247 kb on + strand, within LU632_RS07565at 1422.248 kb on - strand, within LU632_RS07565at 1422.248 kb on - strand, within LU632_RS07565at 1422.248 kb on - strand, within LU632_RS07565at 1422.248 kb on - strand, within LU632_RS07565at 1422.251 kb on + strand, within LU632_RS07565at 1422.251 kb on + strand, within LU632_RS07565at 1422.251 kb on + strand, within LU632_RS07565at 1422.251 kb on + strand, within LU632_RS07565at 1422.251 kb on + strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.252 kb on - strand, within LU632_RS07565at 1422.253 kb on + strand, within LU632_RS07565at 1422.254 kb on - strand, within LU632_RS07565at 1422.254 kb on - strand, within LU632_RS07565

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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1,419,817 - LU632_RS07545 0.76 -1.9
1,419,988 - LU632_RS07545 0.88 +0.9
1,420,007 + LU632_RS07545 0.90 -1.2
1,420,199 + +0.8
1,420,200 - -0.6
1,420,205 - +1.5
1,420,241 + +0.1
1,420,241 + +1.9
1,420,241 + -0.3
1,420,242 - -0.7
1,420,315 + LU632_RS07550 0.53 -3.3
1,420,378 + -0.1
1,420,379 - -2.2
1,420,440 + LU632_RS07555 0.35 +1.7
1,420,441 + LU632_RS07555 0.35 -1.2
1,420,466 - LU632_RS07555 0.43 +2.0
1,420,466 - LU632_RS07555 0.43 -0.9
1,420,528 + LU632_RS07555 0.61 +0.7
1,420,529 - LU632_RS07555 0.62 -2.2
1,420,532 + LU632_RS07555 0.62 +2.6
1,420,589 + LU632_RS07555 0.79 -0.0
1,420,670 - +0.8
1,420,670 - +0.9
1,420,670 - +0.9
1,420,673 + +0.8
1,420,688 - +0.2
1,420,688 - +0.9
1,420,712 + +0.7
1,420,713 - -1.1
1,420,726 - +2.3
1,420,800 + +0.5
1,420,801 - +1.4
1,420,846 - LU632_RS07560 0.11 +1.9
1,420,901 + LU632_RS07560 0.22 -0.3
1,420,901 + LU632_RS07560 0.22 +2.9
1,421,187 + LU632_RS07560 0.77 -3.1
1,421,262 + -1.2
1,421,264 + -1.1
1,421,264 + +2.2
1,421,265 - -0.1
1,421,268 + -0.6
1,421,268 + -1.7
1,421,269 - +1.3
1,421,269 - +0.2
1,421,336 - +1.7
1,421,506 + LU632_RS07565 0.14 +0.9
1,421,558 + LU632_RS07565 0.18 -0.4
1,421,566 + LU632_RS07565 0.18 +1.5
1,421,566 + LU632_RS07565 0.18 -0.4
1,421,567 - LU632_RS07565 0.18 -0.6
1,421,567 - LU632_RS07565 0.18 +1.3
1,421,567 - LU632_RS07565 0.18 +1.4
1,421,581 + LU632_RS07565 0.19 -0.1
1,421,833 + LU632_RS07565 0.37 +3.1
1,421,921 - LU632_RS07565 0.43 -0.1
1,422,043 + LU632_RS07565 0.52 +0.4
1,422,043 + LU632_RS07565 0.52 -2.1
1,422,044 - LU632_RS07565 0.52 +0.1
1,422,247 + LU632_RS07565 0.66 +0.5
1,422,247 + LU632_RS07565 0.66 +0.6
1,422,247 + LU632_RS07565 0.66 -0.6
1,422,247 + LU632_RS07565 0.66 +0.6
1,422,248 - LU632_RS07565 0.66 -0.1
1,422,248 - LU632_RS07565 0.66 -0.5
1,422,248 - LU632_RS07565 0.66 +0.0
1,422,248 - LU632_RS07565 0.66 -3.7
1,422,251 + LU632_RS07565 0.66 -0.6
1,422,251 + LU632_RS07565 0.66 -0.2
1,422,251 + LU632_RS07565 0.66 -2.5
1,422,251 + LU632_RS07565 0.66 +0.2
1,422,251 + LU632_RS07565 0.66 +0.7
1,422,252 - LU632_RS07565 0.66 -1.9
1,422,252 - LU632_RS07565 0.66 +0.4
1,422,252 - LU632_RS07565 0.66 -0.9
1,422,252 - LU632_RS07565 0.66 +0.2
1,422,252 - LU632_RS07565 0.66 -0.4
1,422,252 - LU632_RS07565 0.66 +0.9
1,422,253 + LU632_RS07565 0.66 +0.0
1,422,254 - LU632_RS07565 0.66 +0.9
1,422,254 - LU632_RS07565 0.66 -1.1

Or see this region's nucleotide sequence