Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07260

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,371,809	+				+0.5
1,371,810	-				+0.9
1,371,833	+				+0.2
1,371,833	+				+0.9
1,371,833	+				-1.9
1,371,833	+				-0.0
1,371,834	-				-1.4
1,371,834	-				-2.0
1,371,834	-				-0.3
1,371,834	-				+1.0
1,371,924	-		LU632_RS07255	0.19	-0.5
1,371,959	+		LU632_RS07255	0.30	-2.3
1,372,002	-		LU632_RS07255	0.44	-0.3
1,372,002	-		LU632_RS07255	0.44	+0.6
1,372,117	+		LU632_RS07255	0.81	+2.2
1,372,146	+				+0.8
1,372,146	+				-2.4
1,372,146	+				-0.8
1,372,147	-				-2.1
1,372,150	+				-0.1
1,372,150	+				+1.9
1,372,150	+				-0.8
1,372,151	-				-1.9
1,372,151	-				+1.7
1,372,151	-				+0.4
1,372,151	-				-1.1
1,372,151	-				-0.0
1,372,151	-				-1.4
1,372,151	-				+1.4
1,372,151	-				+0.9
1,372,151	-				+0.3
1,372,168	+				+1.1
1,372,169	-				-0.1
1,372,169	-				+0.4
1,372,194	+				+1.4
1,372,229	+				+1.8
1,372,310	-				+2.2
1,372,355	+				+0.7
1,372,415	+				+2.4
1,372,415	+				-1.4
1,372,415	+				+0.2
1,372,418	+				-0.7
1,372,418	+				+0.3
1,372,426	-				-2.1
1,372,437	-				-3.1
1,372,485	+		LU632_RS07260	0.27	+1.5
1,372,485	+		LU632_RS07260	0.27	+0.9
1,372,486	-		LU632_RS07260	0.28	+1.8
1,372,488	-		LU632_RS07260	0.29	+0.7
1,372,488	-		LU632_RS07260	0.29	+0.6