Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07080

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07070 and LU632_RS07075 are separated by 169 nucleotidesLU632_RS07075 and LU632_RS07080 are separated by 43 nucleotidesLU632_RS07080 and LU632_RS07085 overlap by 4 nucleotidesLU632_RS07085 and LU632_RS07090 are separated by 192 nucleotidesLU632_RS07090 and LU632_RS07095 are separated by 125 nucleotides LU632_RS07070: LU632_RS07070 - hypothetical protein, at 1,341,859 to 1,342,371 _RS07070 LU632_RS07075: LU632_RS07075 - phage holin family protein, at 1,342,541 to 1,342,849 _RS07075 LU632_RS07080: LU632_RS07080 - HNH endonuclease, at 1,342,893 to 1,343,378 _RS07080 LU632_RS07085: LU632_RS07085 - lysozyme, at 1,343,375 to 1,343,800 _RS07085 LU632_RS07090: LU632_RS07090 - Rz1 family lipoprotein, at 1,343,993 to 1,344,190 _RS07090 LU632_RS07095: LU632_RS07095 - hypothetical protein, at 1,344,316 to 1,345,035 _RS07095 Position (kb) 1342 1343 1344Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1341.916 kb on - strand, within LU632_RS07070at 1342.059 kb on - strand, within LU632_RS07070at 1342.095 kb on - strand, within LU632_RS07070at 1342.236 kb on - strand, within LU632_RS07070at 1342.236 kb on - strand, within LU632_RS07070at 1342.417 kb on + strandat 1342.607 kb on + strand, within LU632_RS07075at 1342.625 kb on + strand, within LU632_RS07075at 1342.625 kb on + strand, within LU632_RS07075at 1342.625 kb on + strand, within LU632_RS07075at 1342.625 kb on + strand, within LU632_RS07075at 1342.625 kb on + strand, within LU632_RS07075at 1342.627 kb on + strand, within LU632_RS07075at 1342.628 kb on - strand, within LU632_RS07075at 1342.628 kb on - strand, within LU632_RS07075at 1342.748 kb on - strand, within LU632_RS07075at 1342.748 kb on - strand, within LU632_RS07075at 1342.748 kb on - strand, within LU632_RS07075at 1342.751 kb on + strand, within LU632_RS07075at 1342.752 kb on - strand, within LU632_RS07075at 1342.755 kb on - strand, within LU632_RS07075at 1342.755 kb on - strand, within LU632_RS07075at 1342.755 kb on - strand, within LU632_RS07075at 1342.890 kb on + strandat 1342.890 kb on + strandat 1342.891 kb on - strandat 1342.891 kb on - strandat 1342.891 kb on - strandat 1342.891 kb on - strandat 1342.891 kb on - strandat 1342.975 kb on - strand, within LU632_RS07080at 1342.991 kb on - strand, within LU632_RS07080at 1342.991 kb on - strand, within LU632_RS07080at 1342.994 kb on + strand, within LU632_RS07080at 1343.123 kb on - strand, within LU632_RS07080at 1343.123 kb on - strand, within LU632_RS07080at 1343.123 kb on - strand, within LU632_RS07080at 1343.252 kb on + strand, within LU632_RS07080at 1343.276 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.278 kb on + strand, within LU632_RS07080at 1343.279 kb on - strand, within LU632_RS07080at 1343.279 kb on - strand, within LU632_RS07080at 1343.286 kb on + strand, within LU632_RS07080at 1343.318 kb on + strand, within LU632_RS07080at 1343.353 kb on - strandat 1343.354 kb on + strandat 1343.355 kb on - strandat 1343.355 kb on - strandat 1343.382 kb on + strandat 1343.382 kb on + strandat 1343.407 kb on + strandat 1343.438 kb on + strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.439 kb on - strand, within LU632_RS07085at 1343.480 kb on - strand, within LU632_RS07085at 1343.532 kb on - strand, within LU632_RS07085at 1343.532 kb on - strand, within LU632_RS07085at 1343.694 kb on - strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.729 kb on + strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.730 kb on - strand, within LU632_RS07085at 1343.869 kb on + strandat 1343.873 kb on + strandat 1343.873 kb on + strandat 1343.874 kb on - strandat 1343.874 kb on - strandat 1343.974 kb on + strandat 1344.146 kb on - strand, within LU632_RS07090at 1344.206 kb on - strandat 1344.230 kb on - strandat 1344.271 kb on - strandat 1344.271 kb on - strandat 1344.272 kb on + strandat 1344.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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1,341,916 - LU632_RS07070 0.11 -3.4
1,342,059 - LU632_RS07070 0.39 +1.6
1,342,095 - LU632_RS07070 0.46 -0.3
1,342,236 - LU632_RS07070 0.73 +0.4
1,342,236 - LU632_RS07070 0.73 +0.3
1,342,417 + +0.0
1,342,607 + LU632_RS07075 0.21 -1.4
1,342,625 + LU632_RS07075 0.27 +0.9
1,342,625 + LU632_RS07075 0.27 -0.1
1,342,625 + LU632_RS07075 0.27 +1.0
1,342,625 + LU632_RS07075 0.27 -1.5
1,342,625 + LU632_RS07075 0.27 -1.1
1,342,627 + LU632_RS07075 0.28 -0.1
1,342,628 - LU632_RS07075 0.28 +0.6
1,342,628 - LU632_RS07075 0.28 +0.3
1,342,748 - LU632_RS07075 0.67 -0.1
1,342,748 - LU632_RS07075 0.67 -0.3
1,342,748 - LU632_RS07075 0.67 -0.5
1,342,751 + LU632_RS07075 0.68 +0.3
1,342,752 - LU632_RS07075 0.68 -2.4
1,342,755 - LU632_RS07075 0.69 +0.5
1,342,755 - LU632_RS07075 0.69 -2.3
1,342,755 - LU632_RS07075 0.69 -1.9
1,342,890 + -3.0
1,342,890 + -0.1
1,342,891 - -2.3
1,342,891 - +1.2
1,342,891 - +1.3
1,342,891 - -0.7
1,342,891 - +0.4
1,342,975 - LU632_RS07080 0.17 +0.2
1,342,991 - LU632_RS07080 0.20 +0.1
1,342,991 - LU632_RS07080 0.20 +0.3
1,342,994 + LU632_RS07080 0.21 +1.2
1,343,123 - LU632_RS07080 0.47 +0.2
1,343,123 - LU632_RS07080 0.47 +3.4
1,343,123 - LU632_RS07080 0.47 +2.1
1,343,252 + LU632_RS07080 0.74 +0.7
1,343,276 + LU632_RS07080 0.79 +0.8
1,343,278 + LU632_RS07080 0.79 +0.9
1,343,278 + LU632_RS07080 0.79 -3.1
1,343,278 + LU632_RS07080 0.79 +0.5
1,343,278 + LU632_RS07080 0.79 +0.6
1,343,279 - LU632_RS07080 0.79 +0.5
1,343,279 - LU632_RS07080 0.79 -0.3
1,343,286 + LU632_RS07080 0.81 -2.8
1,343,318 + LU632_RS07080 0.87 +0.9
1,343,353 - +0.1
1,343,354 + +1.9
1,343,355 - -1.9
1,343,355 - -0.5
1,343,382 + -3.0
1,343,382 + +0.0
1,343,407 + +4.0
1,343,438 + LU632_RS07085 0.15 -1.1
1,343,439 - LU632_RS07085 0.15 -0.4
1,343,439 - LU632_RS07085 0.15 -0.5
1,343,439 - LU632_RS07085 0.15 +0.6
1,343,439 - LU632_RS07085 0.15 +0.4
1,343,439 - LU632_RS07085 0.15 +2.5
1,343,480 - LU632_RS07085 0.25 +0.1
1,343,532 - LU632_RS07085 0.37 -2.8
1,343,532 - LU632_RS07085 0.37 -0.7
1,343,694 - LU632_RS07085 0.75 -0.8
1,343,729 + LU632_RS07085 0.83 +0.9
1,343,729 + LU632_RS07085 0.83 -0.3
1,343,729 + LU632_RS07085 0.83 -0.8
1,343,729 + LU632_RS07085 0.83 -0.4
1,343,730 - LU632_RS07085 0.83 -1.4
1,343,730 - LU632_RS07085 0.83 -2.1
1,343,730 - LU632_RS07085 0.83 -2.6
1,343,730 - LU632_RS07085 0.83 +1.8
1,343,869 + -2.3
1,343,873 + +0.6
1,343,873 + +0.8
1,343,874 - +0.9
1,343,874 - +1.1
1,343,974 + -1.9
1,344,146 - LU632_RS07090 0.77 +0.7
1,344,206 - +0.6
1,344,230 - +0.6
1,344,271 - +0.1
1,344,271 - +2.4
1,344,272 + -1.4
1,344,273 - -2.8

Or see this region's nucleotide sequence