Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06635

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,273,231	+				+2.6
1,273,242	+				+1.2
1,273,243	-				+0.7
1,273,245	-				-1.3
1,273,266	-				+0.3
1,273,271	-				+2.2
1,273,277	-				-0.7
1,273,396	+	cysZ	LU632_RS06630	0.19	+2.7
1,273,455	+	cysZ	LU632_RS06630	0.27	+1.1
1,273,537	+	cysZ	LU632_RS06630	0.38	+1.2
1,273,543	-	cysZ	LU632_RS06630	0.38	-0.4
1,273,544	+	cysZ	LU632_RS06630	0.39	-0.4
1,273,544	+	cysZ	LU632_RS06630	0.39	+2.3
1,273,575	+	cysZ	LU632_RS06630	0.43	+2.9
1,273,576	-	cysZ	LU632_RS06630	0.43	-0.1
1,273,671	-	cysZ	LU632_RS06630	0.55	+0.9
1,273,691	+	cysZ	LU632_RS06630	0.58	+1.5
1,273,792	-	cysZ	LU632_RS06630	0.71	-0.5
1,273,792	-	cysZ	LU632_RS06630	0.71	-1.9
1,273,997	-				-0.7
1,274,026	-				-0.0
1,274,029	+				+1.2
1,274,029	+				+0.3
1,274,030	-				+1.1
1,274,051	+				+0.0
1,274,052	-				-0.7
1,274,052	-				+0.1
1,274,063	-				+1.0
1,274,171	+				-3.0
1,274,207	+				+0.3
1,274,745	+	zipA	LU632_RS06635	0.56	-1.1
1,274,899	+	zipA	LU632_RS06635	0.73	-0.1
1,274,899	+	zipA	LU632_RS06635	0.73	-3.5
1,274,995	+	zipA	LU632_RS06635	0.83	-2.4
1,275,034	+	zipA	LU632_RS06635	0.88	-2.4
1,275,107	+				-2.4
1,275,167	+				+1.5