Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06550

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,259,325	+				-1.1
1,259,353	+				+2.5
1,259,353	+				+0.1
1,259,406	+				-0.4
1,259,407	-				+0.9
1,259,436	+				+0.9
1,259,615	-		LU632_RS06545	0.31	-0.9
1,259,765	+		LU632_RS06545	0.48	-1.9
1,259,791	-		LU632_RS06545	0.52	+1.5
1,259,816	+		LU632_RS06545	0.54	-1.0
1,259,826	+		LU632_RS06545	0.56	-1.9
1,259,827	-		LU632_RS06545	0.56	-0.1
1,259,971	-		LU632_RS06545	0.73	+2.8
1,260,045	-		LU632_RS06545	0.81	-0.7
1,260,048	+		LU632_RS06545	0.82	-1.1
1,260,048	+		LU632_RS06545	0.82	+0.4
1,260,049	-		LU632_RS06545	0.82	+1.0
1,260,055	-		LU632_RS06545	0.83	-0.1
1,260,091	+		LU632_RS06545	0.87	+0.5
1,260,092	-		LU632_RS06545	0.87	+2.2
1,260,134	+				-1.9
1,260,140	+				-0.1
1,260,141	-				-1.0
1,260,143	-				+2.7
1,260,143	-				+0.0
1,260,145	-				-2.8
1,260,145	-				-1.4
1,260,240	+				-1.4
1,260,251	+				-1.1
1,260,251	+				-3.5
1,260,350	-		LU632_RS06550	0.19	+0.7
1,260,569	+		LU632_RS06550	0.80	+1.4
1,260,583	-		LU632_RS06550	0.84	+2.8
1,260,594	+		LU632_RS06550	0.87	-1.4
1,260,594	+		LU632_RS06550	0.87	+2.7
1,260,595	-		LU632_RS06550	0.87	+0.2
1,260,595	-		LU632_RS06550	0.87	+1.2
1,260,595	-		LU632_RS06550	0.87	-1.7
1,260,606	+				+0.4
1,260,606	+				-1.3
1,260,678	-				+0.5
1,260,699	-				+1.8
1,260,718	+				+0.0
1,260,719	-				-1.4
1,260,719	-				-0.8
1,260,899	+				-0.4
1,260,900	-				+0.2
1,261,030	+				-0.1
1,261,033	-				-0.4
1,261,033	-				+5.5
1,261,065	+				+0.9
1,261,075	-				+1.5
1,261,079	-				+1.2
1,261,095	-				+4.1
1,261,229	+				+0.2
1,261,230	-				+3.5
1,261,286	+				-3.1
1,261,342	+				+0.4
1,261,343	-				-1.9
1,261,376	-				-1.3
1,261,377	+				+0.1
1,261,377	+				+2.0
1,261,377	+				+1.0
1,261,378	-				+1.6
1,261,425	+				-0.0