Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS06515 and LU632_RS06520 are separated by 155 nucleotides LU632_RS06520 and LU632_RS06525 are separated by 53 nucleotides
LU632_RS06515: LU632_RS06515 - aldo/keto reductase, at 1,254,283 to 1,255,270
_RS06515
LU632_RS06520: LU632_RS06520 - zinc ABC transporter substrate-binding protein, at 1,255,426 to 1,255,767
_RS06520
LU632_RS06525: LU632_RS06525 - Nramp family divalent metal transporter, at 1,255,821 to 1,257,053
_RS06525
Position (kb)
1255
1256 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1254.444 kb on + strand, within LU632_RS06515 at 1254.474 kb on + strand, within LU632_RS06515 at 1254.478 kb on + strand, within LU632_RS06515 at 1254.478 kb on + strand, within LU632_RS06515 at 1254.479 kb on - strand, within LU632_RS06515 at 1254.479 kb on - strand, within LU632_RS06515 at 1254.479 kb on - strand, within LU632_RS06515 at 1254.586 kb on - strand, within LU632_RS06515 at 1254.602 kb on - strand, within LU632_RS06515 at 1254.621 kb on + strand, within LU632_RS06515 at 1254.621 kb on + strand, within LU632_RS06515 at 1254.625 kb on + strand, within LU632_RS06515 at 1254.626 kb on - strand, within LU632_RS06515 at 1254.643 kb on - strand, within LU632_RS06515 at 1254.747 kb on + strand, within LU632_RS06515 at 1254.747 kb on + strand, within LU632_RS06515 at 1254.772 kb on + strand, within LU632_RS06515 at 1254.773 kb on - strand, within LU632_RS06515 at 1254.852 kb on - strand, within LU632_RS06515 at 1254.852 kb on - strand, within LU632_RS06515 at 1254.979 kb on + strand, within LU632_RS06515 at 1254.980 kb on - strand, within LU632_RS06515 at 1254.980 kb on - strand, within LU632_RS06515 at 1255.070 kb on + strand, within LU632_RS06515 at 1255.080 kb on + strand, within LU632_RS06515 at 1255.081 kb on - strand, within LU632_RS06515 at 1255.084 kb on - strand, within LU632_RS06515 at 1255.084 kb on - strand, within LU632_RS06515 at 1255.154 kb on + strand, within LU632_RS06515 at 1255.248 kb on - strand at 1255.250 kb on - strand at 1255.341 kb on - strand at 1255.374 kb on + strand at 1255.374 kb on + strand at 1255.374 kb on + strand at 1255.374 kb on + strand at 1255.374 kb on + strand at 1255.375 kb on - strand at 1255.375 kb on - strand at 1255.376 kb on + strand at 1255.376 kb on + strand at 1255.376 kb on + strand at 1255.377 kb on - strand at 1255.377 kb on - strand at 1255.378 kb on + strand at 1255.378 kb on + strand at 1255.379 kb on - strand at 1255.379 kb on - strand at 1255.379 kb on - strand at 1255.379 kb on - strand at 1255.379 kb on - strand at 1255.441 kb on - strand at 1255.449 kb on - strand at 1255.466 kb on + strand, within LU632_RS06520 at 1255.609 kb on - strand, within LU632_RS06520 at 1255.735 kb on - strand at 1255.846 kb on + strand at 1255.950 kb on - strand, within LU632_RS06525 at 1256.040 kb on - strand, within LU632_RS06525 at 1256.045 kb on + strand, within LU632_RS06525 at 1256.045 kb on + strand, within LU632_RS06525 at 1256.045 kb on + strand, within LU632_RS06525 at 1256.102 kb on + strand, within LU632_RS06525 at 1256.228 kb on - strand, within LU632_RS06525 at 1256.359 kb on + strand, within LU632_RS06525 at 1256.360 kb on - strand, within LU632_RS06525 at 1256.360 kb on - strand, within LU632_RS06525 at 1256.413 kb on + strand, within LU632_RS06525 at 1256.552 kb on - strand, within LU632_RS06525 at 1256.552 kb on - strand, within LU632_RS06525 at 1256.656 kb on - strand, within LU632_RS06525
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 1,254,444 + LU632_RS06515 0.16 -1.1 1,254,474 + LU632_RS06515 0.19 +1.4 1,254,478 + LU632_RS06515 0.20 -0.2 1,254,478 + LU632_RS06515 0.20 +0.9 1,254,479 - LU632_RS06515 0.20 -1.1 1,254,479 - LU632_RS06515 0.20 -1.7 1,254,479 - LU632_RS06515 0.20 -1.1 1,254,586 - LU632_RS06515 0.31 +1.5 1,254,602 - LU632_RS06515 0.32 +0.2 1,254,621 + LU632_RS06515 0.34 +0.6 1,254,621 + LU632_RS06515 0.34 -2.3 1,254,625 + LU632_RS06515 0.35 +0.6 1,254,626 - LU632_RS06515 0.35 -0.4 1,254,643 - LU632_RS06515 0.36 +1.1 1,254,747 + LU632_RS06515 0.47 +0.6 1,254,747 + LU632_RS06515 0.47 -1.3 1,254,772 + LU632_RS06515 0.49 -0.2 1,254,773 - LU632_RS06515 0.50 +3.1 1,254,852 - LU632_RS06515 0.58 -0.1 1,254,852 - LU632_RS06515 0.58 +0.0 1,254,979 + LU632_RS06515 0.70 +1.4 1,254,980 - LU632_RS06515 0.71 -0.2 1,254,980 - LU632_RS06515 0.71 -0.1 1,255,070 + LU632_RS06515 0.80 -0.8 1,255,080 + LU632_RS06515 0.81 -0.4 1,255,081 - LU632_RS06515 0.81 +2.2 1,255,084 - LU632_RS06515 0.81 -0.1 1,255,084 - LU632_RS06515 0.81 -0.9 1,255,154 + LU632_RS06515 0.88 +0.6 1,255,248 - -0.5 1,255,250 - +0.9 1,255,341 - +0.8 1,255,374 + +0.7 1,255,374 + +0.9 1,255,374 + +0.6 1,255,374 + +1.4 1,255,374 + +1.1 1,255,375 - -2.5 1,255,375 - +1.3 1,255,376 + +0.5 1,255,376 + +1.2 1,255,376 + -0.1 1,255,377 - +0.1 1,255,377 - +0.2 1,255,378 + -0.4 1,255,378 + -1.1 1,255,379 - -0.9 1,255,379 - -1.3 1,255,379 - +1.8 1,255,379 - +0.2 1,255,379 - -0.1 1,255,441 - +0.5 1,255,449 - +0.4 1,255,466 + LU632_RS06520 0.12 -1.4 1,255,609 - LU632_RS06520 0.54 -2.8 1,255,735 - -0.7 1,255,846 + -0.1 1,255,950 - LU632_RS06525 0.10 +0.2 1,256,040 - LU632_RS06525 0.18 +1.4 1,256,045 + LU632_RS06525 0.18 -2.5 1,256,045 + LU632_RS06525 0.18 -1.6 1,256,045 + LU632_RS06525 0.18 -1.4 1,256,102 + LU632_RS06525 0.23 -2.8 1,256,228 - LU632_RS06525 0.33 -2.1 1,256,359 + LU632_RS06525 0.44 -1.4 1,256,360 - LU632_RS06525 0.44 +1.8 1,256,360 - LU632_RS06525 0.44 -2.9 1,256,413 + LU632_RS06525 0.48 -2.3 1,256,552 - LU632_RS06525 0.59 -0.1 1,256,552 - LU632_RS06525 0.59 -2.3 1,256,656 - LU632_RS06525 0.68 -0.1
Or see this region's nucleotide sequence