Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06520

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,254,444	+		LU632_RS06515	0.16	-1.1
1,254,474	+		LU632_RS06515	0.19	+1.4
1,254,478	+		LU632_RS06515	0.20	-0.2
1,254,478	+		LU632_RS06515	0.20	+0.9
1,254,479	-		LU632_RS06515	0.20	-1.1
1,254,479	-		LU632_RS06515	0.20	-1.7
1,254,479	-		LU632_RS06515	0.20	-1.1
1,254,586	-		LU632_RS06515	0.31	+1.5
1,254,602	-		LU632_RS06515	0.32	+0.2
1,254,621	+		LU632_RS06515	0.34	+0.6
1,254,621	+		LU632_RS06515	0.34	-2.3
1,254,625	+		LU632_RS06515	0.35	+0.6
1,254,626	-		LU632_RS06515	0.35	-0.4
1,254,643	-		LU632_RS06515	0.36	+1.1
1,254,747	+		LU632_RS06515	0.47	+0.6
1,254,747	+		LU632_RS06515	0.47	-1.3
1,254,772	+		LU632_RS06515	0.49	-0.2
1,254,773	-		LU632_RS06515	0.50	+3.1
1,254,852	-		LU632_RS06515	0.58	-0.1
1,254,852	-		LU632_RS06515	0.58	+0.0
1,254,979	+		LU632_RS06515	0.70	+1.4
1,254,980	-		LU632_RS06515	0.71	-0.2
1,254,980	-		LU632_RS06515	0.71	-0.1
1,255,070	+		LU632_RS06515	0.80	-0.8
1,255,080	+		LU632_RS06515	0.81	-0.4
1,255,081	-		LU632_RS06515	0.81	+2.2
1,255,084	-		LU632_RS06515	0.81	-0.1
1,255,084	-		LU632_RS06515	0.81	-0.9
1,255,154	+		LU632_RS06515	0.88	+0.6
1,255,248	-				-0.5
1,255,250	-				+0.9
1,255,341	-				+0.8
1,255,374	+				+0.7
1,255,374	+				+0.9
1,255,374	+				+0.6
1,255,374	+				+1.4
1,255,374	+				+1.1
1,255,375	-				-2.5
1,255,375	-				+1.3
1,255,376	+				+0.5
1,255,376	+				+1.2
1,255,376	+				-0.1
1,255,377	-				+0.1
1,255,377	-				+0.2
1,255,378	+				-0.4
1,255,378	+				-1.1
1,255,379	-				-0.9
1,255,379	-				-1.3
1,255,379	-				+1.8
1,255,379	-				+0.2
1,255,379	-				-0.1
1,255,441	-				+0.5
1,255,449	-				+0.4
1,255,466	+		LU632_RS06520	0.12	-1.4
1,255,609	-		LU632_RS06520	0.54	-2.8
1,255,735	-				-0.7
1,255,846	+				-0.1
1,255,950	-		LU632_RS06525	0.10	+0.2
1,256,040	-		LU632_RS06525	0.18	+1.4
1,256,045	+		LU632_RS06525	0.18	-2.5
1,256,045	+		LU632_RS06525	0.18	-1.6
1,256,045	+		LU632_RS06525	0.18	-1.4
1,256,102	+		LU632_RS06525	0.23	-2.8
1,256,228	-		LU632_RS06525	0.33	-2.1
1,256,359	+		LU632_RS06525	0.44	-1.4
1,256,360	-		LU632_RS06525	0.44	+1.8
1,256,360	-		LU632_RS06525	0.44	-2.9
1,256,413	+		LU632_RS06525	0.48	-2.3
1,256,552	-		LU632_RS06525	0.59	-0.1
1,256,552	-		LU632_RS06525	0.59	-2.3
1,256,656	-		LU632_RS06525	0.68	-0.1