Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06270

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,199,489	+	rlmM	LU632_RS06265	0.38	+0.2
1,199,550	+	rlmM	LU632_RS06265	0.43	-1.1
1,199,577	-	rlmM	LU632_RS06265	0.46	+1.8
1,199,715	+	rlmM	LU632_RS06265	0.58	-0.5
1,199,716	-	rlmM	LU632_RS06265	0.58	-1.4
1,199,716	-	rlmM	LU632_RS06265	0.58	-2.8
1,199,754	+	rlmM	LU632_RS06265	0.62	+0.2
1,199,774	+	rlmM	LU632_RS06265	0.63	-0.1
1,199,774	+	rlmM	LU632_RS06265	0.63	-1.7
1,199,775	-	rlmM	LU632_RS06265	0.63	-0.3
1,199,775	-	rlmM	LU632_RS06265	0.63	-2.1
1,199,862	-	rlmM	LU632_RS06265	0.71	+0.5
1,199,862	-	rlmM	LU632_RS06265	0.71	+0.3
1,199,862	-	rlmM	LU632_RS06265	0.71	-0.1
1,199,865	+	rlmM	LU632_RS06265	0.72	+0.9
1,199,866	-	rlmM	LU632_RS06265	0.72	-2.3
1,199,885	+	rlmM	LU632_RS06265	0.73	+2.7
1,199,885	+	rlmM	LU632_RS06265	0.73	-1.9
1,199,886	-	rlmM	LU632_RS06265	0.74	-1.9
1,199,886	-	rlmM	LU632_RS06265	0.74	+0.7
1,199,978	+	rlmM	LU632_RS06265	0.82	-0.4
1,199,979	-	rlmM	LU632_RS06265	0.82	-1.5
1,200,099	+				+1.1
1,200,100	-				-0.7
1,200,100	-				+0.4
1,200,191	+				+0.9
1,200,192	-				+0.2
1,200,210	-				-1.1
1,200,298	-	xni	LU632_RS06270	0.11	+1.4
1,200,474	-	xni	LU632_RS06270	0.34	-0.1
1,200,556	+	xni	LU632_RS06270	0.45	-0.4
1,200,561	+	xni	LU632_RS06270	0.46	+3.5
1,200,594	+	xni	LU632_RS06270	0.50	-0.1
1,200,779	+	xni	LU632_RS06270	0.74	+0.8
1,200,779	+	xni	LU632_RS06270	0.74	+0.4
1,200,779	+	xni	LU632_RS06270	0.74	+1.4
1,200,780	-	xni	LU632_RS06270	0.74	+1.9
1,200,942	+				+0.4
1,200,943	-				-1.2
1,200,959	-				-1.1
1,200,962	-				-2.8
1,201,046	+				+1.1
1,201,093	+				+0.4
1,201,094	-				-2.0
1,201,097	-				+1.3
1,201,118	-				-0.4
1,201,335	+	ppnN	LU632_RS06275	0.23	-0.9
1,201,375	-	ppnN	LU632_RS06275	0.26	+0.5
1,201,440	-	ppnN	LU632_RS06275	0.31	-0.8
1,201,440	-	ppnN	LU632_RS06275	0.31	-0.7
1,201,468	-	ppnN	LU632_RS06275	0.33	+0.4
1,201,482	+	ppnN	LU632_RS06275	0.34	-0.3
1,201,483	-	ppnN	LU632_RS06275	0.34	-1.3
1,201,499	+	ppnN	LU632_RS06275	0.35	-0.7
1,201,499	+	ppnN	LU632_RS06275	0.35	+1.3
1,201,499	+	ppnN	LU632_RS06275	0.35	-0.4
1,201,500	-	ppnN	LU632_RS06275	0.35	+0.0
1,201,583	+	ppnN	LU632_RS06275	0.42	+0.8
1,201,627	-	ppnN	LU632_RS06275	0.45	+1.0
1,201,646	-	ppnN	LU632_RS06275	0.46	-0.7
1,201,646	-	ppnN	LU632_RS06275	0.46	+0.7
1,201,646	-	ppnN	LU632_RS06275	0.46	+1.9
1,201,765	-	ppnN	LU632_RS06275	0.55	-1.1
1,201,766	+	ppnN	LU632_RS06275	0.55	-0.9
1,201,837	-	ppnN	LU632_RS06275	0.60	-0.9
1,201,842	+	ppnN	LU632_RS06275	0.61	+0.6
1,201,842	+	ppnN	LU632_RS06275	0.61	-1.3
1,201,843	-	ppnN	LU632_RS06275	0.61	-2.2
1,201,893	-	ppnN	LU632_RS06275	0.64	+1.7