Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS06100 and rppH are separated by 157 nucleotides rppH and ptsP are separated by 12 nucleotides ptsP and lgt are separated by 181 nucleotides
LU632_RS06100: LU632_RS06100 - hypothetical protein, at 1,162,694 to 1,162,906
_RS06100
LU632_RS06105: rppH - RNA pyrophosphohydrolase, at 1,163,064 to 1,163,588
rppH
LU632_RS06110: ptsP - phosphoenolpyruvate--protein phosphotransferase, at 1,163,601 to 1,165,847
ptsP
LU632_RS06115: lgt - prolipoprotein diacylglyceryl transferase, at 1,166,029 to 1,166,910
lgt
Position (kb) 1163
1164
1165
1166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1162.628 kb on - strand at 1162.746 kb on - strand, within LU632_RS06100 at 1163.547 kb on - strand at 1163.586 kb on + strand at 1163.600 kb on + strand at 1163.600 kb on + strand at 1163.601 kb on - strand at 1163.601 kb on - strand at 1163.601 kb on - strand at 1163.748 kb on + strand at 1163.752 kb on - strand at 1163.888 kb on + strand, within ptsP at 1163.888 kb on + strand, within ptsP at 1163.889 kb on - strand, within ptsP at 1163.889 kb on - strand, within ptsP at 1163.889 kb on - strand, within ptsP at 1163.892 kb on + strand, within ptsP at 1163.892 kb on - strand, within ptsP at 1163.893 kb on - strand, within ptsP at 1163.893 kb on - strand, within ptsP at 1163.893 kb on - strand, within ptsP at 1163.945 kb on + strand, within ptsP at 1164.247 kb on + strand, within ptsP at 1164.248 kb on - strand, within ptsP at 1164.333 kb on + strand, within ptsP at 1164.334 kb on - strand, within ptsP at 1164.334 kb on - strand, within ptsP at 1164.346 kb on + strand, within ptsP at 1164.346 kb on + strand, within ptsP at 1164.347 kb on + strand, within ptsP at 1164.375 kb on + strand, within ptsP at 1164.465 kb on - strand, within ptsP at 1164.468 kb on + strand, within ptsP at 1164.468 kb on + strand, within ptsP at 1164.469 kb on - strand, within ptsP at 1164.469 kb on - strand, within ptsP at 1164.548 kb on + strand, within ptsP at 1164.637 kb on + strand, within ptsP at 1164.814 kb on - strand, within ptsP at 1164.848 kb on + strand, within ptsP at 1164.981 kb on + strand, within ptsP at 1165.002 kb on - strand, within ptsP at 1165.128 kb on + strand, within ptsP at 1165.128 kb on + strand, within ptsP at 1165.128 kb on + strand, within ptsP at 1165.129 kb on - strand, within ptsP at 1165.129 kb on - strand, within ptsP at 1165.129 kb on - strand, within ptsP at 1165.129 kb on - strand, within ptsP at 1165.130 kb on + strand, within ptsP at 1165.130 kb on + strand, within ptsP at 1165.131 kb on - strand, within ptsP at 1165.353 kb on + strand, within ptsP at 1165.355 kb on + strand, within ptsP at 1165.355 kb on + strand, within ptsP at 1165.355 kb on + strand, within ptsP at 1165.355 kb on - strand, within ptsP at 1165.382 kb on + strand, within ptsP at 1165.382 kb on + strand, within ptsP at 1165.409 kb on + strand, within ptsP at 1165.466 kb on + strand, within ptsP at 1165.473 kb on + strand, within ptsP at 1165.473 kb on + strand, within ptsP at 1165.553 kb on - strand, within ptsP at 1165.553 kb on - strand, within ptsP at 1165.642 kb on + strand at 1165.667 kb on - strand at 1165.667 kb on - strand at 1165.701 kb on + strand at 1165.701 kb on + strand at 1165.701 kb on + strand at 1165.756 kb on + strand at 1165.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 1,162,628 - -0.8 1,162,746 - LU632_RS06100 0.24 +1.1 1,163,547 - -3.0 1,163,586 + +2.4 1,163,600 + +2.3 1,163,600 + -1.9 1,163,601 - +1.1 1,163,601 - +4.3 1,163,601 - +0.9 1,163,748 + +0.5 1,163,752 - +4.5 1,163,888 + ptsP LU632_RS06110 0.13 +3.1 1,163,888 + ptsP LU632_RS06110 0.13 +2.9 1,163,889 - ptsP LU632_RS06110 0.13 +2.6 1,163,889 - ptsP LU632_RS06110 0.13 +1.3 1,163,889 - ptsP LU632_RS06110 0.13 +2.2 1,163,892 + ptsP LU632_RS06110 0.13 +5.2 1,163,892 - ptsP LU632_RS06110 0.13 +3.3 1,163,893 - ptsP LU632_RS06110 0.13 +2.6 1,163,893 - ptsP LU632_RS06110 0.13 +2.1 1,163,893 - ptsP LU632_RS06110 0.13 +2.3 1,163,945 + ptsP LU632_RS06110 0.15 +2.5 1,164,247 + ptsP LU632_RS06110 0.29 +5.3 1,164,248 - ptsP LU632_RS06110 0.29 +1.9 1,164,333 + ptsP LU632_RS06110 0.33 +3.0 1,164,334 - ptsP LU632_RS06110 0.33 +3.6 1,164,334 - ptsP LU632_RS06110 0.33 +3.4 1,164,346 + ptsP LU632_RS06110 0.33 +3.8 1,164,346 + ptsP LU632_RS06110 0.33 -0.1 1,164,347 + ptsP LU632_RS06110 0.33 +2.9 1,164,375 + ptsP LU632_RS06110 0.34 +3.4 1,164,465 - ptsP LU632_RS06110 0.38 -1.4 1,164,468 + ptsP LU632_RS06110 0.39 +1.5 1,164,468 + ptsP LU632_RS06110 0.39 +4.3 1,164,469 - ptsP LU632_RS06110 0.39 -0.1 1,164,469 - ptsP LU632_RS06110 0.39 +2.6 1,164,548 + ptsP LU632_RS06110 0.42 +3.3 1,164,637 + ptsP LU632_RS06110 0.46 +3.7 1,164,814 - ptsP LU632_RS06110 0.54 -0.4 1,164,848 + ptsP LU632_RS06110 0.55 +2.1 1,164,981 + ptsP LU632_RS06110 0.61 -2.2 1,165,002 - ptsP LU632_RS06110 0.62 +4.2 1,165,128 + ptsP LU632_RS06110 0.68 +2.3 1,165,128 + ptsP LU632_RS06110 0.68 +3.3 1,165,128 + ptsP LU632_RS06110 0.68 +2.5 1,165,129 - ptsP LU632_RS06110 0.68 +0.4 1,165,129 - ptsP LU632_RS06110 0.68 +2.7 1,165,129 - ptsP LU632_RS06110 0.68 +0.2 1,165,129 - ptsP LU632_RS06110 0.68 +3.2 1,165,130 + ptsP LU632_RS06110 0.68 -0.1 1,165,130 + ptsP LU632_RS06110 0.68 +1.6 1,165,131 - ptsP LU632_RS06110 0.68 +2.1 1,165,353 + ptsP LU632_RS06110 0.78 +4.0 1,165,355 + ptsP LU632_RS06110 0.78 +1.3 1,165,355 + ptsP LU632_RS06110 0.78 -0.1 1,165,355 + ptsP LU632_RS06110 0.78 +1.0 1,165,355 - ptsP LU632_RS06110 0.78 +3.4 1,165,382 + ptsP LU632_RS06110 0.79 +3.9 1,165,382 + ptsP LU632_RS06110 0.79 +0.9 1,165,409 + ptsP LU632_RS06110 0.80 +0.9 1,165,466 + ptsP LU632_RS06110 0.83 +4.1 1,165,473 + ptsP LU632_RS06110 0.83 -1.4 1,165,473 + ptsP LU632_RS06110 0.83 +4.0 1,165,553 - ptsP LU632_RS06110 0.87 +2.9 1,165,553 - ptsP LU632_RS06110 0.87 -0.7 1,165,642 + +2.9 1,165,667 - +2.6 1,165,667 - +3.4 1,165,701 + +1.6 1,165,701 + -1.7 1,165,701 + +2.6 1,165,756 + +2.8 1,165,892 + -3.2
Or see this region's nucleotide sequence