Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05400

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,042,714	-				-1.4
1,042,714	-				-2.3
1,042,755	+				-3.0
1,042,756	-				+0.9
1,042,757	+				+0.1
1,042,757	+				-0.7
1,042,757	+				-2.2
1,042,758	-				-1.1
1,042,758	-				-2.0
1,042,758	-				-3.6
1,042,758	-				-4.5
1,042,770	+				+1.4
1,042,849	+				+4.0
1,042,849	+				+3.0
1,042,850	-				+2.6
1,042,872	+		LU632_RS05395	0.11	-0.3
1,042,912	-		LU632_RS05395	0.17	+4.4
1,042,965	+		LU632_RS05395	0.26	+4.3
1,042,966	-		LU632_RS05395	0.26	+2.1
1,043,041	-		LU632_RS05395	0.38	+3.4
1,043,171	-		LU632_RS05395	0.59	+0.1
1,043,328	+		LU632_RS05395	0.85	+3.7
1,043,331	+		LU632_RS05395	0.86	+1.7
1,043,331	+		LU632_RS05395	0.86	+4.5
1,043,371	+				+4.2
1,043,371	+				+3.3
1,043,375	-				-1.1
1,043,496	+				+3.2
1,043,497	-				+0.8
1,043,503	+				+0.7
1,043,504	-				+0.4
1,043,728	+				-0.7
1,043,834	+		LU632_RS05400	0.11	+0.2
1,043,834	+		LU632_RS05400	0.11	+2.1
1,043,838	+		LU632_RS05400	0.11	-1.7
1,043,874	+		LU632_RS05400	0.14	+2.7
1,043,943	+		LU632_RS05400	0.20	+3.2
1,043,944	-		LU632_RS05400	0.20	+2.2
1,043,944	-		LU632_RS05400	0.20	+3.1
1,044,070	-		LU632_RS05400	0.30	+1.6
1,044,113	-		LU632_RS05400	0.33	-1.1
1,044,143	-		LU632_RS05400	0.36	-1.6
1,044,426	+		LU632_RS05400	0.59	+0.6
1,044,427	-		LU632_RS05400	0.59	+1.6
1,044,430	-		LU632_RS05400	0.59	+2.7
1,044,583	+		LU632_RS05400	0.72	-0.7
1,044,584	-		LU632_RS05400	0.72	-0.2
1,044,584	-		LU632_RS05400	0.72	-0.1
1,044,602	-		LU632_RS05400	0.74	+1.3
1,044,683	+		LU632_RS05400	0.80	+0.9
1,044,684	-		LU632_RS05400	0.80	+2.6
1,044,684	-		LU632_RS05400	0.80	-0.4
1,044,789	+		LU632_RS05400	0.89	+0.1
1,044,789	+		LU632_RS05400	0.89	+1.1
1,044,790	-		LU632_RS05400	0.89	+0.9
1,044,792	+		LU632_RS05400	0.89	+1.7
1,044,792	+		LU632_RS05400	0.89	+2.2
1,044,809	-				-0.7
1,044,851	-				-2.1
1,044,859	-				+1.6
1,044,859	-				-1.3
1,044,859	-				+2.3
1,044,859	-				+0.7
1,044,992	+				-0.7
1,045,025	+		LU632_RS05405	0.12	-1.4
1,045,026	-		LU632_RS05405	0.12	+0.4
1,045,123	-		LU632_RS05405	0.24	-0.4
1,045,165	+		LU632_RS05405	0.29	+2.3
1,045,184	+		LU632_RS05405	0.31	-1.1
1,045,185	-		LU632_RS05405	0.31	+0.7
1,045,185	-		LU632_RS05405	0.31	-0.0
1,045,185	-		LU632_RS05405	0.31	-0.7
1,045,235	+		LU632_RS05405	0.37	-0.5
1,045,407	+		LU632_RS05405	0.58	+2.6
1,045,407	+		LU632_RS05405	0.58	-0.8
1,045,408	-		LU632_RS05405	0.58	-0.7
1,045,408	-		LU632_RS05405	0.58	+0.6
1,045,460	+		LU632_RS05405	0.64	-0.1
1,045,461	-		LU632_RS05405	0.64	-0.1
1,045,472	+		LU632_RS05405	0.66	+1.4
1,045,630	+		LU632_RS05405	0.85	-1.0
1,045,630	+		LU632_RS05405	0.85	+0.7
1,045,631	-		LU632_RS05405	0.85	-1.1
1,045,631	-		LU632_RS05405	0.85	+2.3
1,045,631	-		LU632_RS05405	0.85	-2.7
1,045,631	-		LU632_RS05405	0.85	+0.9
1,045,635	+		LU632_RS05405	0.86	-1.8
1,045,635	+		LU632_RS05405	0.86	+0.9
1,045,635	+		LU632_RS05405	0.86	-1.2
1,045,635	+		LU632_RS05405	0.86	+1.3
1,045,635	+		LU632_RS05405	0.86	+0.3
1,045,635	+		LU632_RS05405	0.86	-0.9
1,045,636	-		LU632_RS05405	0.86	+0.9
1,045,636	-		LU632_RS05405	0.86	+1.1
1,045,636	-		LU632_RS05405	0.86	+1.1
1,045,636	-		LU632_RS05405	0.86	-1.7
1,045,636	-		LU632_RS05405	0.86	-1.2
1,045,636	-		LU632_RS05405	0.86	+0.6
1,045,637	+		LU632_RS05405	0.86	-0.9
1,045,719	-				+0.3
1,045,756	-				-0.1
1,045,780	+				-0.2
1,045,780	+				-2.0
1,045,781	-				-0.2
1,045,798	+				+1.9
1,045,855	+				-0.8
1,045,855	+				-0.9
1,045,860	+				-1.7
1,045,913	+				-1.7
1,045,913	+				-4.5
1,045,915	+				-0.5
1,045,915	+				-1.1
1,045,915	+				-0.3
1,045,916	-				-2.1